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KP.3+S:T22N ( 54 seqs, 8 countries,mainly find in Canada) #1748

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Memorablea opened this issue Jul 17, 2024 · 14 comments
Closed

KP.3+S:T22N ( 54 seqs, 8 countries,mainly find in Canada) #1748

Memorablea opened this issue Jul 17, 2024 · 14 comments
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designated KP.3 N Glycan S:22
Milestone
KP.3.6

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@Memorablea
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Memorablea commented Jul 17, 2024 •
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KP.3(S:Q493E)>S:T22N

GISAID Query: C21627A, C23039G, -C12459T,-G15372T,C7113T,-C2263A,-G26217A ( THX @FedeGueli)

EPI_ISL ID:
EPI_ISL_19168000, EPI_ISL_19188388, EPI_ISL_19199085,
EPI_ISL_19229289, EPI_ISL_19239996, EPI_ISL_19254416,
EPI_ISL_19254424, EPI_ISL_19264683, EPI_ISL_19264685-19264686,
EPI_ISL_19264689-19264693, EPI_ISL_19264701, EPI_ISL_19264705-19264706,
EPI_ISL_19264710, EPI_ISL_19264731, EPI_ISL_19264733,
EPI_ISL_19264735, EPI_ISL_19264737, EPI_ISL_19264739,
EPI_ISL_19264763-19264765, EPI_ISL_19264768, EPI_ISL_19264770,
EPI_ISL_19264781, EPI_ISL_19264783

UshER Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2a6b4_7decc0.json?f_userOrOld=uploaded%20sample
image
@Memorablea Memorablea changed the title KP.3+S:T22N ( 33seqs, two country,mainly find in Canada) KP.3+S:T22N ( 31 seqs, two country,mainly find in Canada) Jul 18, 2024
@Memorablea
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Canada +10. 41 now.

@Memorablea Memorablea changed the title KP.3+S:T22N ( 31 seqs, two country,mainly find in Canada) KP.3+S:T22N ( 41 seqs, two country,mainly find in Canada) Jul 24, 2024
@Memorablea
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Canada+5,Germany+1.47 now.

@Memorablea Memorablea changed the title KP.3+S:T22N ( 41 seqs, two country,mainly find in Canada) KP.3+S:T22N ( 47 seqs, two country,mainly find in Canada) Jul 30, 2024
@FedeGueli FedeGueli added the Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks label Jul 30, 2024
@FedeGueli
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Still mainly a Canadian cluster but being the fastest in the charts need to be monitored closely: very likely its advantage will flatten soon , but it could be also it will be anyway fast.

@xz-keg
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xz-keg commented Aug 8, 2024

50 seqs, also in UK, France and USA

@xz-keg xz-keg changed the title KP.3+S:T22N ( 47 seqs, two country,mainly find in Canada) KP.3+S:T22N ( 50 seqs, 5 countries,mainly find in Canada) Aug 8, 2024
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xz-keg commented Aug 10, 2024

+1 Spain

@xz-keg xz-keg changed the title KP.3+S:T22N ( 50 seqs, 5 countries,mainly find in Canada) KP.3+S:T22N ( 51 seqs, 6 countries,mainly find in Canada) Aug 10, 2024
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xz-keg commented Aug 15, 2024 •
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+1 Denmark.

@FedeGueli it is quickly spreading to multiple countries.

@xz-keg xz-keg changed the title KP.3+S:T22N ( 51 seqs, 6 countries,mainly find in Canada) KP.3+S:T22N ( 53 seqs, 7 countries,mainly find in Canada) Aug 15, 2024
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xz-keg commented Aug 15, 2024

+1 Ireland

@xz-keg xz-keg changed the title KP.3+S:T22N ( 53 seqs, 7 countries,mainly find in Canada) KP.3+S:T22N ( 54 seqs, 8 countries,mainly find in Canada) Aug 15, 2024
@Memorablea
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Still mainly a Canadian cluster but being the fastest in the charts need to be monitored closely: very likely its advantage will flatten soon , but it could be also it will be anyway fast.

At present, it has spread to many other countries.Please remove the label.

@Memorablea
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+1 Ireland

Thank you very much for your work.❤️

@FedeGueli
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Still mainly a Canadian cluster but being the fastest in the charts need to be monitored closely: very likely its advantage will flatten soon , but it could be also it will be anyway fast.

At present, it has spread to many other countries.Please remove the label.

yeah but if you remove the cluster there are just a few sequences. when i ll see its advantage stopping diving down i will remove it.

@FedeGueli FedeGueli added this to the MC.17 milestone Aug 16, 2024
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@FedeGueli FedeGueli added designated and removed Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks labels Aug 16, 2024
@xz-keg

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FedeGueli referenced this issue in cov-lineages/pango-designation Aug 16, 2024
@corneliusroemer
Designate MC.17, LW.1.1, LW.1.2, JN.1.16.5
56fe08a
FedeGueli referenced this issue in cov-lineages/pango-designation Aug 16, 2024
@corneliusroemer
Fix: MC.17 -> KP.3.6
6c26cbf 
Thanks @FedeGueli
@FedeGueli FedeGueli modified the milestones: MC.17, KP.3.6 Aug 16, 2024
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MC.17 is sub judice. already pointed at Cornelius

Now redesignated KP.3.6 via cov-lineages/pango-designation@6c26cbf

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