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KP.2 Plus S:I934V and S:N30K emerged in China (32 , 7 countries) #1699

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FedeGueli opened this issue Jul 5, 2024 · 11 comments
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KP.2 Plus S:I934V and S:N30K emerged in China (32 , 7 countries) #1699

FedeGueli opened this issue Jul 5, 2024 · 11 comments
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designated High local prevalence Lineage that apparently gained high prevalence in one country or region KP.2 PLPro S:30 S:934
Milestone
KP.2.25.1

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@FedeGueli
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Defining mutations:
KP.2 > Orf1a:P1803L (C5673T = PLPro_P240L) > C14220T > S:I934V (A24362G) > T931A, G8872A, S:N30K (T21652G)
Query: T931A,C5673T,G8872A

Samples: 7 ( 6 on Gisaid)
Countries: China 3, Hong Kong 2, Canada 1, NY 1 not on Gisaid
Tree:
Screenshot 2024-07-05 alle 12 06 54
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_210f3_7c4540.json?label=id:node_7010897

Note that the three samples from Mainland China misses a lot of areas in the NTD so i think they have S:N30K too
Screenshot 2024-07-05 alle 12 07 55
@FedeGueli FedeGueli changed the title KP.2 Plus S:I934V and S:N30K emerged in China (7) KP.2 Plus S:I934V and S:N30K emerged in China (11 , 4 countries) Jul 24, 2024
@FedeGueli
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11 with 4 samples from HK and a new one from Japan

@FedeGueli FedeGueli added the High local prevalence Lineage that apparently gained high prevalence in one country or region label Jul 24, 2024
@FedeGueli FedeGueli changed the title KP.2 Plus S:I934V and S:N30K emerged in China (11 , 4 countries) KP.2 Plus S:I934V and S:N30K emerged in China (12 , 4 countries) Aug 3, 2024
@FedeGueli
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not fast enough clsoing it

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Aug 3, 2024
@FedeGueli FedeGueli changed the title KP.2 Plus S:I934V and S:N30K emerged in China (12 , 4 countries) KP.2 Plus S:I934V and S:N30K emerged in China (13 , 4 countries) Aug 7, 2024
@xz-keg
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xz-keg commented Aug 15, 2024

Two more of this branch from the 8-14 Hong Kong batch.

@xz-keg xz-keg changed the title KP.2 Plus S:I934V and S:N30K emerged in China (13 , 4 countries) KP.2 Plus S:I934V and S:N30K emerged in China (15 , 4 countries) Aug 15, 2024
@xz-keg
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xz-keg commented Aug 15, 2024

Also 1 more in the 8-14 Gansu batch.

@xz-keg xz-keg changed the title KP.2 Plus S:I934V and S:N30K emerged in China (15 , 4 countries) KP.2 Plus S:I934V and S:N30K emerged in China (16 , 4 countries) Aug 15, 2024
@FedeGueli FedeGueli reopened this Aug 15, 2024
@FedeGueli
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GThx reopened it.

@FedeGueli FedeGueli changed the title KP.2 Plus S:I934V and S:N30K emerged in China (16 , 4 countries) KP.2 Plus S:I934V and S:N30K emerged in China (17 , 5 countries) Aug 22, 2024
@FedeGueli
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+1 Malaysia

@FedeGueli FedeGueli changed the title KP.2 Plus S:I934V and S:N30K emerged in China (17 , 5 countries) KP.2 Plus S:I934V and S:N30K emerged in China (19 , 5 countries) Aug 29, 2024
@FedeGueli FedeGueli changed the title KP.2 Plus S:I934V and S:N30K emerged in China (19 , 5 countries) KP.2 Plus S:I934V and S:N30K emerged in China (19 , 6 countries) Aug 29, 2024
@FedeGueli
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+2 , new country Australia (Vic)

@xz-keg
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xz-keg commented Sep 4, 2024

+1 Denmark +4 Shanxi

I think this one shall be proposed.

@xz-keg xz-keg changed the title KP.2 Plus S:I934V and S:N30K emerged in China (19 , 6 countries) KP.2 Plus S:I934V and S:N30K emerged in China (24 , 7 countries) Sep 4, 2024
@xz-keg xz-keg added the To be proposed Green light for proposal label Sep 4, 2024
@FedeGueli
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+1 Denmark +4 Shanxi

I think this one shall be proposed.

please propose it and the other you highlighted me some days ago. i cant propose them until monday

@xz-keg xz-keg changed the title KP.2 Plus S:I934V and S:N30K emerged in China (24 , 7 countries) KP.2 Plus S:I934V and S:N30K emerged in China (32 , 7 countries) Sep 7, 2024
@FedeGueli FedeGueli mentioned this issue Sep 8, 2024
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@FedeGueli
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now proposed here: cov-lineages/pango-designation#2770

@FedeGueli FedeGueli added designated and removed To be proposed Green light for proposal labels Oct 20, 2024
@FedeGueli FedeGueli added this to the KP.2.25.1 milestone Oct 20, 2024
@FedeGueli
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Designated KP.2.25.1 via cov-lineages/pango-designation@a3d38ca#diff-ead4244ff49c81bc758e9f068f5ef42156bd985b9c86de8fa4d6fcd7f2829090R1204

FedeGueli referenced this issue in cov-lineages/pango-designation Oct 20, 2024
@corneliusroemer
Designate KP.2.25 and sublineages
a3d38ca
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