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KP.3.1 + S:N556K(20 seq, 3 countries) #1614

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DoropFan opened this issue Jun 13, 2024 · 4 comments
Closed

KP.3.1 + S:N556K(20 seq, 3 countries) #1614

DoropFan opened this issue Jun 13, 2024 · 4 comments
Labels
designated KP.3 S:556
Milestone
KP.3.1.5

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@DoropFan
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Sub-lineage of:KP.3.1
Earliest sequence:2024-04-23|England|EPI_ISL_19108400
Most recent sequence:2024-05-28|USA|EPI_ISL_19191568
Countries circulating:England(9), USA(6), Spain(1)
Sequences:16

UShER Tree
KP.3.1>ORF3a:I186V(A25948G)>ORF1a:Q998H(G3259T)>S:N556K(C23230A)
KP 3 1+N556K
Query: C23230A, G3259T, G15372T

CovSpectrum
Genomes
EPI_ISL_19146683
EPI_ISL_19175824
EPI_ISL_19108400
EPI_ISL_19164995
EPI_ISL_19179317
EPI_ISL_19175804
EPI_ISL_19164962
EPI_ISL_19164878
EPI_ISL_19179218
EPI_ISL_19175791
EPI_ISL_19164858
EPI_ISL_19191698
EPI_ISL_19191785
EPI_ISL_19191568
EPI_ISL_19190075
@DoropFan DoropFan changed the title KP.3.1 + S:N556K(16 seq, 3 countries) KP.3.1 + S:N556K(20 seq, 3 countries) Jun 15, 2024
@FedeGueli
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Sorry i have missed to add the labels to this one

@FedeGueli
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Designated KP.3.1.5 via cov-lineages/pango-designation@1a68eee

@FedeGueli FedeGueli added this to the KP.3.1.5 milestone Jun 17, 2024
FedeGueli referenced this issue in cov-lineages/pango-designation Jun 17, 2024
@corneliusroemer
Designate KP.3.1.5 (S:N556K, ORF1a:Q998H, ORF3a:I186V, England)
1a68eee
@DailyCovidCases
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Now 278 seqs
Tree now:
usher
https://cov-spectrum.org/explore/World/AllSamples/Y2024/variants?nextcladePangoLineage=KP.3.1.5*&
Screenshot (251)

@FedeGueli
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already designated KP.3.1.5

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designated KP.3 S:556
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KP.3.1.5
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@FedeGueli @DailyCovidCases @DoropFan