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KP.1.1 (JN.1.11.1.1.1) sublineage with S:R214H (G22203A) and C11866T (13 seqs, 9/54 in Israel since May 2024) #1593

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HynnSpylor opened this issue Jun 3, 2024 · 1 comment
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KP.1.1 (JN.1.11.1.1.1) sublineage with S:R214H (G22203A) and C11866T (13 seqs, 9/54 in Israel since May 2024) #1593

HynnSpylor opened this issue Jun 3, 2024 · 1 comment
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designated FLiRT FLiRT is an Acronym for S:R346T + S:F456L High local prevalence Lineage that apparently gained high prevalence in one country or region S:214 S:1086 S:1104
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KP.1.1.4

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@HynnSpylor
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HynnSpylor commented Jun 3, 2024 •
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Defining mutations:
KP.1.1>C11866T, G22203A (S:R214H)

GISAID query: C11866T, G22203A, G22599C, A24819G

Earliest seq: 2024-04-28 (South Africa, EPI_ISL_19161569)
Most recent seq: 2024-05-18 (Israel, EPI_ISL_19169568)
Countries detected: Israel (11), US (1, detected from International Airport with unknown travel history), South Africa (1)

Usher Tree: (I suppose the two branches can be combined)
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3f7ad_d7ac80.json
联想截图_20240603181448

All of them also get C4540T except for South African seq. It can be monitored as relative high prevalence in Israel and detected in US airport.

Genomes:
EPI_ISL_19161569, EPI_ISL_19162531, EPI_ISL_19169542, EPI_ISL_19169548, EPI_ISL_19169554, EPI_ISL_19169567-19169568,
EPI_ISL_19169579-19169581, EPI_ISL_19169583, EPI_ISL_19169587, EPI_ISL_19169592
@FedeGueli FedeGueli added S:214 S:1104 FLiRT FLiRT is an Acronym for S:R346T + S:F456L High local prevalence Lineage that apparently gained high prevalence in one country or region S:1086 designated labels Jun 3, 2024
@FedeGueli
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Designated KP.1.1.4 via cov-lineages/pango-designation@f20c83e

FedeGueli referenced this issue in cov-lineages/pango-designation Jun 4, 2024
@corneliusroemer
Designate KP.1.1.4 (S:R214H, C11866T, C23929T)
f20c83e
@FedeGueli FedeGueli added this to the KP.1.1.4 milestone Jun 4, 2024
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designated FLiRT FLiRT is an Acronym for S:R346T + S:F456L High local prevalence Lineage that apparently gained high prevalence in one country or region S:214 S:1086 S:1104
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@FedeGueli @HynnSpylor