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JN.1.7 plus S:R346K ( 20 seqs England) #1371

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FedeGueli opened this issue Feb 6, 2024 · 4 comments
Closed

JN.1.7 plus S:R346K ( 20 seqs England) #1371

FedeGueli opened this issue Feb 6, 2024 · 4 comments

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@FedeGueli
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FedeGueli commented Feb 6, 2024

JN.1.7 is the fastest designated lineage circulating with more than 100seqs.
hence i think useful proposing directly this cluster of JN.1.7 plus S:R364K that emerged in England

Defining mutations:
JN.1.7 > S:R346K ( G22599A)
Query:G22599A, G25012T, C25566T,C23277T
Samples : 7
IDs: EPI_ISL_18764191, EPI_ISL_18800746, EPI_ISL_18831935,
EPI_ISL_18842857, EPI_ISL_18860656, EPI_ISL_18860819,
EPI_ISL_18867225
Tree:
Screenshot 2024-02-06 alle 14 32 34
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_4fb38_233310.json?label=id:node_6893318

Note that the top branch with the mutation K346T has been proposed in #1343 and i think it is misplaced here: @AngieHinrichs

@AngieHinrichs
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AngieHinrichs commented Feb 6, 2024

Note that the top branch with the mutation K346T has been proposed in #1343 and i think it is misplaced here: @AngieHinrichs

Yes, it should be separate. I'll try to fix it, thanks @FedeGueli.

@FedeGueli
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FedeGueli commented Feb 7, 2024

Note that the top branch with the mutation K346T has been proposed in #1343 and i think it is misplaced here: @AngieHinrichs

Yes, it should be separate. I'll try to fix it, thanks @FedeGueli.

Thank you

@FedeGueli FedeGueli changed the title JN.1.7 plus S:R346K ( 7 seqs England) JN.1.7 plus S:R346K ( 13 seqs England) Feb 12, 2024
@FedeGueli FedeGueli changed the title JN.1.7 plus S:R346K ( 13 seqs England) JN.1.7 plus S:R346K ( 14 seqs England) Feb 21, 2024
@FedeGueli FedeGueli changed the title JN.1.7 plus S:R346K ( 14 seqs England) JN.1.7 plus S:R346K ( 20 seqs England) Feb 26, 2024
@FedeGueli
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20 England

@xz-keg
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xz-keg commented Mar 1, 2024

Designated JN.1.7.1 from cov-lineages/pango-designation@569c1af

@xz-keg xz-keg closed this as completed Mar 1, 2024
@xz-keg xz-keg added this to the JN.1.7.1 milestone Mar 1, 2024
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