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HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombination with it) circulating in Australia (10) #1338

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FedeGueli opened this issue Jan 24, 2024 · 0 comments
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. S:52 s:157 S:335 S:403 S:452 S:456

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@FedeGueli
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I ve noticed this one cause it convergently acquired the two defining spike mutation of XBB.1.41: S.335S,403K

From the tree it is not evident any recombination although we cant exclude that

Defining mutations:
HV.1 > A15099G > C7051T , C25339T > S:L335S (T22566C), S:R403K ( G22770A)

Query :C25339T,C7051T,T22566C, A15099G

Samples:10 from 4 Countries (Australia mainly , England, Austria and Singapore) 1 sample from January 2024,
first sample from 2023-11-16 Singapore
IDs:
EPI_ISL_18544507, EPI_ISL_18638315, EPI_ISL_18657192,
EPI_ISL_18693781, EPI_ISL_18709891, EPI_ISL_18709963,
EPI_ISL_18712648, EPI_ISL_18717935, EPI_ISL_18744743,
EPI_ISL_18814980

Tree:
Screenshot 2024-01-24 alle 23 20 24
EPI_ISL_18544507, EPI_ISL_18638315, EPI_ISL_18657192,
EPI_ISL_18693781, EPI_ISL_18709891, EPI_ISL_18709963,
EPI_ISL_18712648, EPI_ISL_18717935, EPI_ISL_18744743,
EPI_ISL_18814980

@FedeGueli FedeGueli changed the title HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombintion with it) circualting in Australia HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombination with it) circualting in Australia Jan 24, 2024
@FedeGueli FedeGueli changed the title HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombination with it) circualting in Australia HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombination with it) circulating in Australia Jan 24, 2024
@FedeGueli FedeGueli changed the title HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombination with it) circulating in Australia HV.1 with S:L335S & S:R403K (convergently with XBB.1.41 or recombination with it) circulating in Australia (10) Jan 25, 2024
@FedeGueli FedeGueli added the Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. label Feb 14, 2024
@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Mar 3, 2024
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Labels
Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. S:52 s:157 S:335 S:403 S:452 S:456
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