JN.1 with S:V1104L parental of SLip Branch 4 of #1253 emerged in India ( 16 seqs)

[FedeGueli]

This was first described by @aviczhl2 in #1253
India is experimenting a supposedly huge wave of JN.1 recently a lot of samples have been uploaded from there.
As in the past waves many samples have artefactual reversions hence this lineages is splitted ( cc @AngieHinrichs) in different trees, so the image below is just indicative :

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice7_genome_test_3aa55_7b6bc0.json?label=id:node_6827336

Defining mutations:
JN.1> G17334T, S:V1104L (G24872T)
Query: G24872T, G17334T,C897A

Samples: 10
, EPI_ISL_18683064, EPI_ISL_18694660,
EPI_ISL_18694669, EPI_ISL_18694672, EPI_ISL_18704304,
EPI_ISL_18704343, EPI_ISL_18704350, EPI_ISL_18718937,
EPI_ISL_18718979, EPI_ISL_18718993
plus EPI_ISL_18682687 that looks like a recombinant or contamination of this lineage with an unknown donor ( that could be also a very different one)

[xz-keg]

15/790=2% India from 2023-12.

[xz-keg]

Better use G24872T, G17334T,C28958A which captures 21. Some India seqs have C897G and some has no coverage there.

[FedeGueli]

Designated JN.1.11 via cov-lineages/pango-designation@1e13380