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JN.1 with S:M1229I ( 34 Sequences, 5 countries, mainly Canada- 4 States) 5 seqs with S:T572I #1087

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FedeGueli opened this issue Nov 16, 2023 · 6 comments
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JN.1 with S:M1229I ( 34 Sequences, 5 countries, mainly Canada- 4 States) 5 seqs with S:T572I #1087

FedeGueli opened this issue Nov 16, 2023 · 6 comments
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BA.2.86 designated JN.1 S:1229
Milestone
JN.1.2

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@FedeGueli
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FedeGueli commented Nov 16, 2023 •
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JN.1 > S:M1229I (G25249T)

Gisaid query: G25249T,T27810C,T3565C

Samples:
EPI_ISL_18486527, EPI_ISL_18492896, EPI_ISL_18496250,
EPI_ISL_18501461, EPI_ISL_18504052, EPI_ISL_18505281,
EPI_ISL_18505329, EPI_ISL_18505452

First sample collected in Puerto Rico on 20/10/2023

Countries : Canada (Alberta, Ontario, Saskatchewan), Puerto RIco, Belgium

Tree:
Schermata 2023-11-16 alle 09 31 53
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_2bd52_5d30f0.json?label=id:node_4439124

Query for the S:T572I branch : G25249T,T27810C,C23277T
@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 8 Sequences, 3 countries, mainly Canada- 3 states) JN.1 with S:M1229I ( 8 Sequences, 3 countries, mainly Canada- 3 States) Nov 16, 2023
@FedeGueli FedeGueli added JN.1 and removed S:455 labels Nov 16, 2023
FedeGueli referenced this issue in cov-lineages/pango-designation Nov 17, 2023
@corneliusroemer
Designate JN.9 (S:M1229I, Netherlands) with 30 seqs
7697276
@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 8 Sequences, 3 countries, mainly Canada- 3 States) JN.1 with S:M1229I ( 10 Sequences, 3 countries, mainly Canada- 3 States) Nov 17, 2023
@FedeGueli
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+2 Alberta

@Memorablea Memorablea mentioned this issue Nov 19, 2023
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@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 10 Sequences, 3 countries, mainly Canada- 3 States) JN.1 with S:M1229I ( 15 Sequences, 3 countries, mainly Canada- 3 States) Nov 21, 2023
@FedeGueli
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  • 5 Ontario, it doenst seem the usual canadian cluster tough looking at the age of patients involved

@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 15 Sequences, 3 countries, mainly Canada- 3 States) JN.1 with S:M1229I ( 23 Sequences, 3 countries, mainly Canada- 3 States) Nov 23, 2023
@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 23 Sequences, 3 countries, mainly Canada- 3 States) JN.1 with S:M1229I ( 23 Sequences, 5 countries, mainly Canada- 3 States) Nov 23, 2023
@FedeGueli
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Now entered some long term care home. 23 now 5 countries.

@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 23 Sequences, 5 countries, mainly Canada- 3 States) JN.1 with S:M1229I ( 31 Sequences, 5 countries, mainly Canada- 3 States) one with S:T572I Nov 29, 2023
@FedeGueli FedeGueli mentioned this issue Nov 29, 2023
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@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 31 Sequences, 5 countries, mainly Canada- 3 States) one with S:T572I JN.1 with S:M1229I ( 34 Sequences, 5 countries, mainly Canada- 4 States) one with S:T572I Dec 1, 2023
@FedeGueli
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+2 Israel

@Memorablea
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JN.1.2 cov-lineages/pango-designation@3a8e590

FedeGueli referenced this issue in cov-lineages/pango-designation Dec 2, 2023
@corneliusroemer
Designate JN.1.2 (S:M1229I, USA/Canada) with 40 seqs
3a8e590
@FedeGueli FedeGueli added this to the JN.1.2 milestone Dec 2, 2023
@FedeGueli
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FedeGueli commented Dec 2, 2023 •
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Designated JN.1.2 via cov-lineages/pango-designation@3a8e590

@FedeGueli FedeGueli changed the title JN.1 with S:M1229I ( 34 Sequences, 5 countries, mainly Canada- 4 States) one with S:T572I JN.1 with S:M1229I ( 34 Sequences, 5 countries, mainly Canada- 4 States) 5 seqs with S:T572I Jan 6, 2024
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