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Priyanka Surana edited this page Aug 30, 2022
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The main branch of our repository is called main, following the new GitHub convention, as opposite to master in nf-core/modules.
main includes all sanger-tol and nf-core modules, while nf-core_master is kept in sync with master@nf-core/modules thanks to a git merge that runs every night. Therefore, you only need to consider this repository for your work, not the nf-core one.
- The repository is public: everyone has read access,
- Only Informatics Infrastructure can push to the main branch (and therefore merge pull-requests),
- 💡 This will likely change to a set of vetted Nextflow reviewers,
- ToLA and Informatics Infrastructure have write access to the rest of the repository, i.e. all can create branches for new modules.
Docker images are likely to be found there:
- https://biocontainers.pro/registry
- https://quay.io/organization/sanger-tol
- https://github.com/orgs/sanger-tol/packages
- https://gitlab.internal.sanger.ac.uk/tol-it/software/docker-images/container_registry/
- Decision Tree – Overall choices
- Getting Started – Initialising your work environment
- Merge Requests – Contributing
- Support & Documentation – List of materials to learn Nextflow, and where to get help
- Email: tol-it@
- Slack: SangerTreeofLife #pipelines
- DM: Priyanka (ps22) or Matthieu (mm49)