Code

Test ci#82

Code

Merged

priyanka-surana merged 20 commits intoalignmentsanger-tol/blobtoolkit:alignmentfrom test_cisanger-tol/blobtoolkit:test_ciCopy head branch name to clipboardSep 26, 2023

+89-51

Commits

Commits on Jul 19, 2023

• Use the path under resources/nextflow

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  c5ed715

Commits on Aug 1, 2023

• Download the databases to make it work on GitHub

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  2364346

• This should be a S3 path too

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  8b78ae5

• Need to use the CRAM files from S3 too

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  fccd64e

• quay.io os now the default registry

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  fe9e34c

• quay.io os now the default registry

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  d66492f

• This file is changed on purpose

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  567ff71

Commits on Aug 4, 2023

• Override the BUSCO settings in the test profile

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  1429168

• Our new convention is use per-pipeline directories under pipeline_info/

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  c061190

Commits on Aug 14, 2023

• Latest nomenclature

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  47dc957

• The minimum version is actually 22.10 (tested on GitHub)

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  56f82e8

• Use the latest version of the Tower action

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  ea0e6d7

• Final version of the BUSCO database

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  eeffa82

Commits on Aug 16, 2023

• Update sanger_test.yml

  gq1

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  4eddcc4

• Update sanger_test_full.yml

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  23b0c4f

• Update sanger_test.yml

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  fbd8e06

• Update sanger_test_full.yml update workflow name

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  4b26819

Commits on Aug 18, 2023

• New tolsoft details

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  418c500

• Fixed the repository name

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  6ad007e

Commits on Sep 18, 2023

• Moved all the test data to the S3 bucket

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  54f5568