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Release 0.5 #104

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merged 42 commits into from
Jul 31, 2024
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0d4c6e7
Update sanger_test.yml - use large tower env
gq1 Feb 13, 2024
1bf0d25
Update sanger_test_full.yml - use large tower env
gq1 Feb 13, 2024
2eea140
Update sanger_test.yml - just add the push condition won't work
gq1 Feb 13, 2024
4992f1c
Update sanger_test_full.yml
gq1 Feb 13, 2024
c36fb21
Merge pull request #93 from sanger-tol/large_tower_env
muffato Feb 14, 2024
acbc472
Merge branch 'main' into dev
muffato Apr 17, 2024
305f87a
Skip the subworkflow if the nohit list is empty
muffato May 1, 2024
2737952
Fixed the documentation
muffato May 1, 2024
948e139
Increased the resources for blastn
muffato May 9, 2024
a25e4bb
Version bump
muffato May 13, 2024
162b5fa
Removed an unused parameter
muffato May 13, 2024
afb27d3
Removed trailing whitespace
muffato May 17, 2024
4a226cf
Channel.of(...).first() is the same as Channel.value(...)
muffato May 17, 2024
0b12ad4
The accession is not appropriate there
muffato May 17, 2024
043a120
Removed some parameters that could in fact not be changed
muffato May 17, 2024
5670deb
The accession number is in fact mutually exclusive of the yaml file
muffato May 17, 2024
083dbb8
This should be value channel
muffato May 19, 2024
9e36a7a
Improved the type and handling of the busco_db channel
muffato May 19, 2024
5c99602
Nicer name, even for compressed files
muffato May 20, 2024
b0e4e57
This module is not used
muffato May 20, 2024
9b1ecc3
typo
muffato May 21, 2024
6581abf
Merge pull request #98 from sanger-tol/clean_params
muffato May 23, 2024
b3c852c
update the default branch from master to main for PR checking
gq1 Jun 5, 2024
01c7d66
Add one more unchanged file for nf-core linting
gq1 Jun 5, 2024
d16a4df
Merge pull request #100 from sanger-tol/ci_branch
gq1 Jun 5, 2024
2ae99f6
bugfix: this should be a megablast
muffato Jun 10, 2024
cfac699
diamond blast should run with the --taxon-exclude option
muffato Jun 24, 2024
c5da99d
Publish peripheral data as well, even if we don't use it ourselves
muffato Jun 4, 2024
e4b63a8
Updated the documentation
muffato Jun 4, 2024
075dce3
`true` is not needed
muffato Jun 5, 2024
aef0532
Switched to the default btk biocontainers because the pacbio one is gone
muffato Jul 1, 2024
7547ead
Merge pull request #99 from sanger-tol/more_published_files
muffato Jul 1, 2024
db3e317
Ignore the missing taxon_id errors issues when -negative_taxids is set
muffato Jun 24, 2024
8cfe4e5
CHANGELOG
muffato Jul 1, 2024
93260b1
blastn needs a bit more memory
muffato Jun 10, 2024
310a812
Adjusted the resources (incl. runtime) of blastn
muffato Jul 1, 2024
b83f05c
There are blast failures we don't know how to fix. Just ignore for now
muffato Jul 15, 2024
5420de2
Merge pull request #103 from sanger-tol/more_bugfixes
muffato Jul 18, 2024
0809ce0
Update input_check.nf
BethYates Jul 30, 2024
a8e2bba
Update CHANGELOG.md
BethYates Jul 30, 2024
50e5431
Merge pull request #107 from sanger-tol/fix_splitCsv_in_fetch_input.nf
BethYates Jul 31, 2024
544c135
Update the release date
muffato Jul 31, 2024
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Update the release date
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muffato authored Jul 31, 2024

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This commit was created on GitHub.com and signed with GitHub’s verified signature.
commit 544c135c533a58b23beac8729cccb04bf7d4cdaf
2 changes: 1 addition & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [[0.5.0](https://github.com/sanger-tol/blobtoolkit/releases/tag/0.5.0)] – Snorlax – []
## [[0.5.0](https://github.com/sanger-tol/blobtoolkit/releases/tag/0.5.0)] – Snorlax – [2024-07-31]

General tidy up of the configuration and the pipeline