Skip to content

Commit

Permalink
Fixed the documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
muffato committed May 1, 2024
1 parent 305f87a commit 2737952
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,8 @@ It takes a samplesheet of BAM/CRAM/FASTQ/FASTA files as input, calculates genome
4. Run BUSCO ([`busco`](https://busco.ezlab.org/))
5. Extract BUSCO genes ([`blobtoolkit/extractbuscos`](https://github.com/blobtoolkit/blobtoolkit))
6. Run Diamond BLASTp against extracted BUSCO genes ([`diamond/blastp`](https://github.com/bbuchfink/diamond))
7. Run BLASTn against extracted BUSCO genes ([`blast/blastn`](https://www.ncbi.nlm.nih.gov/books/NBK131777/))
8. Run BLASTx against extracted BUSCO genes ([`blast/blastx`](https://www.ncbi.nlm.nih.gov/books/NBK131777/))
7. Run BLASTx against sequences with no hit ([`blast/blastn`](https://www.ncbi.nlm.nih.gov/books/NBK131777/))
8. Run BLASTn against sequences still with not hit ([`blast/blastx`](https://www.ncbi.nlm.nih.gov/books/NBK131777/))
9. Count BUSCO genes ([`blobtoolkit/countbuscos`](https://github.com/blobtoolkit/blobtoolkit))
10. Generate combined sequence stats across various window sizes ([`blobtoolkit/windowstats`](https://github.com/blobtoolkit/blobtoolkit))
11. Imports analysis results into a BlobDir dataset ([`blobtoolkit/blobdir`](https://github.com/blobtoolkit/blobtoolkit))
Expand Down

0 comments on commit 2737952

Please sign in to comment.