GitHub pages

.github/workflows/build-wheels.yml

@@ -0,0 +1,37 @@
+name: release
+
+on:
+  workflow_dispatch:
+
+jobs:
+
+  wheels:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [windows-latest, macOS-13, macOS-latest, ubuntu-latest]
+    steps:
+    - uses: actions/checkout@v4
+    - name: Build wheels
+      uses: pypa/[email protected]
+      env:
+        CIBW_BUILD: cp39-* cp310-* cp311-* cp312-*
+        CIBW_SKIP: "*-win32 *-manylinux_i686 pp* *-musllinux*"
+    - uses: actions/upload-artifact@v4
+      with:
+        path: ./wheelhouse/*.whl
+
+  source:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      - name: build the sdist
+        run: |
+          python -m pip install --upgrade build
+          python -m build --sdist
+      - uses: actions/upload-artifact@v4
+        with:
+          path: dist/*.tar.gz

.github/workflows/continuous-integration.yml

@@ -20,6 +20,44 @@ jobs:
     strategy:
       matrix:
         version: ["3.9", "3.10", "3.11", "3.12"]
+    steps:
+
+      - name: Harden Runner
+        uses: step-security/harden-runner@17d0e2bd7d51742c71671bd19fa12bdc9d40a3d6 # v2.8.1
+        with:
+          egress-policy: audit
+
+      - name: Check out the commit
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ~${{ matrix.version }}
+
+      - name: Install development dependencies
+        run: |
+          python3 -m pip install --upgrade pip
+          python3 -m pip install -r requirements.txt
+          python3 -m pip install tomli
+
+      - name: Test install
+        run: python3 -m pip install .[tests]
+
+      - name: Test with pytest
+        run: python3 -m pytest --cov=sansmic --cov=tests examples/ tests/
+
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          flags: ubuntu-latest
+
+  OSes:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        version: ["3.12"]
         os: [windows-latest, macOS-13, macOS-latest, ubuntu-latest]
     steps:
 
@@ -29,10 +67,10 @@ jobs:
           egress-policy: audit
 
       - name: Check out the commit
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ~${{ matrix.version }}
 
@@ -54,18 +92,6 @@ jobs:
           token: ${{ secrets.CODECOV_TOKEN }}
           flags: ${{ matrix.os }}
 
-    #   - name: Check documentation coverage
-    #     run: |
-    #       make coverage
-    #       mv build/coverage/python.txt ../docs-coverage-report-${{ matrix.version }}.txt
-    #     working-directory: ./docs
-
-    #   - name: Archive documentation coverage results
-    #     uses: actions/upload-artifact@v3
-    #     with:
-    #       name: docs-coverage-report-${{ matrix.version }}
-    #       path: docs-coverage-report-${{ matrix.version }}.txt
-
       - name: Test uninstall
         run: python3 -m pip uninstall -y my-repository-name
 

.github/workflows/gh-pages.yml

@@ -0,0 +1,65 @@
+# Deploy Sphinx content to GitHub Pages
+name: Deploy Sphinx documentation
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["main"]
+  release:
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  build:
+    name: Build the documentation with Sphinx
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - run: git fetch origin main
+      - name: troubleshooting
+        run: |
+          git branch
+          git remote -v
+      - uses: actions/setup-python@v5
+        with: 
+          python-version: '3.11'
+      - name: Install package
+        run: |
+          sudo apt-get install -y doxygen graphviz
+          pip install -e .[docs]
+          pip install -r requirements.txt
+      - name: Build documentation
+        run: sphinx-build docs/ docs/_build/html
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: 'docs/_build/html'
+
+  deploy:
+    name: Deploy documentation to GitHub Pages
+    needs: build
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Setup Pages
+        uses: actions/configure-pages@v5
+        with:
+          base_path: /sansmic/${{ github.ref_name }}
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

.github/workflows/release.yml

@@ -13,27 +13,27 @@ jobs:
       matrix:
         os: [windows-latest, macOS-13, macOS-latest, ubuntu-latest]
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Build wheels
       uses: pypa/[email protected]
       env:
         CIBW_BUILD: cp39-* cp310-* cp311-* cp312-*
         CIBW_SKIP: "*-win32 *-manylinux_i686 pp* *-musllinux*"
-    - uses: actions/upload-artifact@v3
+    - uses: actions/upload-artifact@v4
       with:
         path: ./wheelhouse/*.whl
 
   source:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: '3.11'
       - name: build the sdist
         run: |
           python -m pip install --upgrade build
           python -m build --sdist
-      - uses: actions/upload-artifact@v3
+      - uses: actions/upload-artifact@v4
         with:
           path: dist/*.tar.gz

docs/_static/switcher.json

@@ -0,0 +1,14 @@
+[
+    {
+        "name": "latest",
+        "version": "main",
+        "url": "https://sandialabs.github.io/sansmic/",
+        "preferred": true
+    },
+    {
+        "name": "v1.0.0-rc.1",
+        "version": "1.0.0rc1",
+        "url": "https://sandialabs.github.io/sansmic/1.0.0rc1/",
+        "preferred": true
+    }
+]

docs/conf.py

@@ -18,12 +18,14 @@
 
 sys.path.insert(0, os.path.abspath("../src/python"))
 
+import sansmic
+
 # -- Project information and custom options ----------------------------------
 project = "sansmic"
 copyright = "2024 National Technology and Engineering Solutions of Sandia, LLC. Under the terms of Contract DE-NA0003525 with NTESS, the U.S. Government retains certain rights in this software."
 author = "See AUTHORS.md"
 doxygen_installed = True  # determines whether or not to build the extension module documentation - doxygen must be installed for this to work
-version = "1.0.0-rc.1"
+version = sansmic.__version__.replace('-rc.', "rc")
 
 # -- General configuration ---------------------------------------------------
 extensions = [
@@ -217,10 +219,18 @@
     "use_edit_page_button": False,
     "primary_sidebar_end": ["indices.html"],
     "show_toc_level": 2,
+    "switcher": {
+        "json_url": "https://sandialabs.github.io/sansmic/main/_static/switcher.json",
+        "version_match": version,
+    },
     # "secondary_sidebar_items": ["page-toc"], #["page-toc", "edit-this-page", "sourcelink"],
+    "navbar_start": [
+        "navbar-logo",
+        "version-switcher",
+    ],
     "navbar_end": [
-        "theme-switcher.html",
-        "navbar-icon-links.html",
+        "theme-switcher",
+        "navbar-icon-links",
     ],
     # "analytics": {"google_analytics_id": ""},
 }