Pull in updates from development branch

[dbhart]

The following changes are included in this PR

• Initial documentation for how to build/run sansmic
• Basic example of how to run using Jupyter notebook
• Updates to the pyproject TOML file to include semantic releases and optional dependencies
• Initial import of C++ source files
• Use progress bar from rich.progress, which is included with pip and therefore doesn't require additional 3rd party libraries
• Improved arguments for the command line
• HDF5 and JSON results outputs
• Clean-up for the python classes, modification to results class

[dbhart]

• Added options to turn off certain output formats and made C++ formats closer to FORTRAN formats.
• Updated more documentation
• Renamed certain output object field names for consistence

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[dbhart]

Additional updates

• Added unit testing for config file I/O
• Updated and added more installation and run documentation.

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