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Failure getting reference bases
inadequately describes the missing index error
cram
#1732
opened Dec 3, 2024 by
multimeric
Add a module-info.java to enable use on the module path and build a binary with jlink
#1724
opened Oct 16, 2024 by
julesjacobsen
Truncation issue with GZIPInputStream when reading bgzip-compressed streams
#1691
opened Oct 16, 2023 by
jkmatila
VariantContext has inconsistent behavior on getting allele type with spanning deletions
#1686
opened Oct 2, 2023 by
rickymagner
support for Azure blob storage? (specifically access to BAM/CRAM files in Azure blob storage by IGV)
#1685
opened Sep 29, 2023 by
smrgit
SAMFileWriterFactory creates .bai file when writing .cram file
#1672
opened Jul 18, 2023 by
rickymagner
Error when reading a VCF 4.3 file with spaces in INFO field values
#1667
opened May 26, 2023 by
jkmatila
SamReaderFactory should use current defaults when makeDefault() is called
#1666
opened May 24, 2023 by
lbergelson
Escaped doublequotes in INFO descriptions result in invalid VCF file
#1661
opened Mar 13, 2023 by
bartcharbon
Question: Tabix index to find min(POS) and max(POS) in each contig
#1652
opened Feb 14, 2023 by
lindenb
Add a better error message when the reference is too long for indexing
long reference
Bugs and issues related to long reference sequences.
#1651
opened Feb 13, 2023 by
lbergelson
Race conditions accessing CRAM's reference data through ReferenceSource
bug
#1643
opened Jan 9, 2023 by
vruano
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