Update CRAM, SAM, and VCF PDFs

Regenerate PDFs with recent updates: CRAM: typos; pseudocode intro; BS explanation; slice MD5 details SAM: typos; new `@RG PL` value; `@RG PI` is int; file encoding VCF: typos; DPADJ et al were removed; mention CN changes
samtools · Sep 13, 2023 · 9ea3a9d · 9ea3a9d
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diff --git a/CRAMv2.1.pdf b/CRAMv2.1.pdf
diff --git a/CRAMv3.pdf b/CRAMv3.pdf
diff --git a/SAMtags.pdf b/SAMtags.pdf
diff --git a/SAMv1.pdf b/SAMv1.pdf
diff --git a/VCFv4.1.pdf b/VCFv4.1.pdf
diff --git a/VCFv4.3.pdf b/VCFv4.3.pdf
diff --git a/VCFv4.4.pdf b/VCFv4.4.pdf