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@salzman-lab

salzmanlab

README.md

Hi there 👋

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  1. SPLASH SPLASH Public

    Python 42 4

  2. SICILIAN SICILIAN Public

    Python 19 11

  3. SpliZ SpliZ Public

    Nextflow implementation of SpliZ

    Python 13 7

  4. ReadZS ReadZS Public

    The Read Z-score (ReadZS) is a metric that summarizes the transcriptional state of a gene in a single cell.

    Nextflow 4 4

Repositories

Showing 10 of 18 repositories
  • SPRAWL Public

    Subcellular RNA Ranked Statistics

    salzman-lab/SPRAWL’s past year of commit activity
    Jupyter Notebook 3 MIT 0 1 0 Updated Dec 10, 2024
  • SPLASH-plus Public
    salzman-lab/SPLASH-plus’s past year of commit activity
    Nextflow 3 MIT 0 0 0 Updated Nov 5, 2024
  • SPLASH Public
    salzman-lab/SPLASH’s past year of commit activity
    Python 42 MIT 4 1 0 Updated Sep 17, 2024
  • SICILIAN Public
    salzman-lab/SICILIAN’s past year of commit activity
    Python 19 GPL-2.0 11 10 2 Updated Jun 7, 2024
  • SPLASH_supervised_test Public

    The repository contains the script for performing GLM with lasso-based multinomial regression

    salzman-lab/SPLASH_supervised_test’s past year of commit activity
    R 1 1 0 0 Updated Apr 23, 2024
  • sequence_features Public

    A repository to store scripts describing features such as repeats and editing in nucleotide sequences.

    salzman-lab/sequence_features’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 14, 2024
  • bioinformatics-utils Public

    Repository to share useful scripts for bioinformatics and SPLASH post-processing

    salzman-lab/bioinformatics-utils’s past year of commit activity
    Python 0 0 0 0 Updated Mar 8, 2024
  • compactor Public

    Implementation of compactors used in Tabula Sapiens Smart-Seq 2 analysis.

    salzman-lab/compactor’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 8, 2024
  • blast_multiprocessing Public
    salzman-lab/blast_multiprocessing’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 1, 2023
  • SpliZ Public

    Nextflow implementation of SpliZ

    salzman-lab/SpliZ’s past year of commit activity
    Python 13 MIT 7 7 1 Updated Aug 21, 2023
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