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# Dockerfile for Binder | ||
# Reference: https://mybinder.readthedocs.io/en/latest/tutorials/dockerfile.html | ||
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# Pull the Sage docker image | ||
FROM ghcr.io/sagemath/sage/sage-ubuntu-focal-standard-with-targets:dev | ||
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USER root | ||
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# Remove warnings | ||
ENV DEBIAN_FRONTEND noninteractive | ||
ENV DEBCONF_NOWARNINGS="yes" | ||
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# Install system packages | ||
RUN apt-get update | ||
RUN apt-get install -y apt-utils | ||
RUN apt-get install -y git | ||
RUN apt-get install -y sudo | ||
RUN apt-get install -y python3-pip | ||
RUN apt-get install -y texlive | ||
RUN apt-get install -y texlive-luatex | ||
RUN apt-get install -y preview-latex-style | ||
RUN apt-get install -y fonts-freefont-otf | ||
RUN apt-get install -y xindy | ||
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# Install jupyterlab | ||
RUN python3 -m pip install --no-warn-script-location jupyterlab | ||
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# Disable the pupup of Jupyter news | ||
RUN jupyter labextension disable "@jupyterlab/apputils-extension:announcements" | ||
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# Create the user alice with uid 1000 and password alice | ||
ARG NB_USER=alice | ||
ARG NB_UID=1000 | ||
ENV NB_USER alice | ||
ENV NB_UID 1000 | ||
ENV HOME /home/${NB_USER} | ||
RUN adduser --disabled-password --gecos "Default user" --uid ${NB_UID} ${NB_USER} | ||
RUN echo 'alice:alice' | chpasswd && adduser alice sudo | ||
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# Prepare for building Sage | ||
ENV PR_REPO https://github.com/REPO_NAME | ||
ENV PR_BRANCH BRANCH_NAME | ||
ENV BINDER_BRANCH sagemath-environment | ||
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# Build Sage incrementally | ||
WORKDIR /sage | ||
RUN export PATH="/sage/build/bin:$PATH" | ||
RUN git config --global user.email ${NB_USER}@wonderland | ||
RUN git config --global user.name ${NB_USER} | ||
RUN git config --global --add safe.directory $(pwd) | ||
RUN pwd | ||
COPY .gitignore /sage/.gitignore | ||
RUN if [ ! -d .git ]; then git init && git add -A; fi | ||
RUN git fetch ${PR_REPO} ${PR_BRANCH} | ||
RUN git checkout -f -b ${BINDER_BRANCH} FETCH_HEAD | ||
RUN ./bootstrap && ./configure --enable-build-as-root && make -j4 build | ||
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# Make sure the contents of the notebooks directory are in ${HOME} | ||
COPY notebooks/* ${HOME}/ | ||
RUN chown -R ${NB_UID} ${HOME} | ||
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# Install jupyterlab to Sage | ||
RUN /sage/sage -pip install --no-warn-script-location jupyterlab | ||
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# Install Sage packages | ||
# RUN /sage/sage -i <spkg-name> | ||
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# Switch to the user | ||
USER ${NB_USER} | ||
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# This is where kernels are installed | ||
RUN mkdir -p $(jupyter --data-dir)/kernels | ||
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# Install sagemath kernel | ||
RUN ln -s /sage/venv/share/jupyter/kernels/sagemath $(jupyter --data-dir)/kernels | ||
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# Start in the home directory of the user | ||
WORKDIR /home/${NB_USER} |
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name: Create Binder branch | ||
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# How to use this workflow | ||
# | ||
# (1) Go to your forked Sage repo | ||
# (2) In the Actions tab, find "Create Binder branch" workflow | ||
# (3) Run the workflow with your PR branch named say "contribution" | ||
# (4) Wait for the workflow run to finish | ||
# (5) In the Code tab, select the new "contribution-binder" branch | ||
# (6) Find the Binder badge in README.md | ||
# (7) Copy the Binder badge from README.md (in edit mode) | ||
# (8) Paste the Binder badge into the description of your PR in the sagemath/sage repo | ||
# (9) Click the Binder badge to start creating the Binder environment | ||
# (10) Leave it open and come back after an hour. | ||
# (11) The Binder badge is now ready for reviewers of your PR | ||
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on: workflow_dispatch | ||
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jobs: | ||
create-branch: | ||
runs-on: ubuntu-latest | ||
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steps: | ||
- name: Checkout code | ||
uses: actions/checkout@v3 | ||
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- name: Create binder branch | ||
run: | | ||
set -ex | ||
REPO_NAME=${{ github.repository }} | ||
BRANCH_NAME=${GITHUB_REF#refs/heads/} | ||
BINDER_REPO_NAME=${REPO_NAME} | ||
BINDER_BRANCH_NAME=${BRANCH_NAME}-binder | ||
cp .github/workflows/binder-dockerfile Dockerfile | ||
sed -i 's/REPO_NAME/'$(echo "${REPO_NAME}" | sed 's/\//\\\//g')'/' Dockerfile | ||
sed -i 's/BRANCH_NAME/'$(echo "${BRANCH_NAME}" | sed 's/\//\\\//g')'/' Dockerfile | ||
sed -i 's/sagemath\/sage-binder-env\/master/'$(echo "${BINDER_REPO_NAME}/${BINDER_BRANCH_NAME}" | sed 's/\//\\\//g')'/' README.md | ||
if [ ! -d .git ]; then git init; fi | ||
if [ ! -d notebooks ]; then mkdir notebooks && touch notebooks/my_favorite_notebooks.md; fi | ||
git config --global user.email alice@wonderland | ||
git config --global user.name Alice | ||
git config --global --add safe.directory $(pwd) | ||
git checkout -b $BINDER_BRANCH_NAME | ||
git add -A | ||
git commit -a -m "Binder environment for '${BRANCH_NAME}' branch" | ||
git push -f origin $BINDER_BRANCH_NAME |