Use patchelf from the system #2162
Workflow file for this run
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| name: Build & Test using Conda | |
| on: | |
| push: | |
| tags: | |
| - '*' | |
| branches: | |
| - 'public/build/**-runci' | |
| pull_request: | |
| types: | |
| - labeled | |
| workflow_dispatch: | |
| # Allow to run manually | |
| concurrency: | |
| # Cancel previous runs of this workflow for the same branch | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: Conda | |
| runs-on: ${{ matrix.os }} | |
| # Run on push, workflow dispatch and when certain labels are added | |
| if: | | |
| github.event.action != 'labeled' || | |
| github.event.label.name == 'c: packages: optional' || | |
| github.event.label.name == 'c: packages: standard' || | |
| github.event.label.name == 's: run conda ci' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python: ['3.9', '3.10', '3.11'] | |
| # Optional environment is disabled for now as its not yet working | |
| # environment: [environment, environment-optional] | |
| conda-env: [environment] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Check for Miniconda | |
| id: check_conda | |
| run: echo ::set-output name=installed::$CONDA | |
| # Miniconda is installed by default in the ubuntu-latest, however not in the act-image to run it locally | |
| - name: Install Miniconda | |
| if: steps.check_conda.outputs.installed == '' | |
| run: | | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.10.3-Linux-x86_64.sh -O ~/miniconda.sh | |
| bash ~/miniconda.sh -b -p $HOME/miniconda | |
| echo "CONDA=$HOME/miniconda" >> $GITHUB_ENV | |
| - name: Create conda environment files | |
| run: ./bootstrap-conda | |
| - name: Cache conda packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ hashFiles('src/environment.yml') }} | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| mamba-version: "*" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| activate-environment: sage-build | |
| environment-file: src/${{ matrix.conda-env }}.yml | |
| - name: Print Conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda info | |
| conda list | |
| - name: Configure | |
| shell: bash -l {0} | |
| continue-on-error: true | |
| run: | | |
| ./bootstrap | |
| echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json" | |
| ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt --exclude rpy2); do echo --with-system-$pkg=force; done) | |
| echo "::remove-matcher owner=configure-system-package-warning::" | |
| echo "::remove-matcher owner=configure-system-package-error::" | |
| # Manually install ptyprocess for now, until https://github.com/sagemath/sage/issues/32147 is fixed | |
| pip install --no-build-isolation -v -v ptyprocess==0.5.1 | |
| - name: Build | |
| shell: bash -l {0} | |
| run: | | |
| # Use --no-deps and pip check below to verify that all necessary dependencies are installed via conda. | |
| pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf ./pkgs/sage-setup | |
| pip install --no-build-isolation --no-deps -v -v -e ./src | |
| env: | |
| SAGE_NUM_THREADS: 2 | |
| - name: Verify dependencies | |
| if: success() || failure() | |
| shell: bash -l {0} | |
| run: pip check | |
| - name: Test | |
| if: success() || failure() | |
| shell: bash -l {0} | |
| run: ./sage -t --all -p0 | |
| - name: Print logs | |
| if: always() | |
| run: | | |
| for file in $(find . -type f -name "*.log"); do | |
| echo "::group::$file" | |
| cat "$file" | |
| echo "::endgroup::" | |
| done |