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Fall 2022 UCSD Extension Course (167347 Processing Actionable Data in Genomics)

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Processing Actionable Data in Genomics (PADG: Fall 2022)

Welcome to the Processing Actionable Data in Genomics course offered at UC San Diego Extension

Instructors: Dr. Sabah Ul-Hasan (@sabahzero)
Teaching Assistants (TAs): Lily Huang (@liih005)
Original materials created by Dr. Tristan Carland (@carlandt)

This course spans 9 weeks and is part of the Applied Bioinformatics certification program

Course Outcomes

In this course, you will --Compare the utility of different types of sequencing experiments Modules: 1, 2 Assignments: Topol Paper, Quiz 1, COSMIC discussion --Structure bioinformatic pipelines to fit the experiment Modules: 3, 5, 7 Assignments: Quiz 2, Alignment assignment, viz discussion --Implement steps in bioinformatic processing Modules: 4, 5, 6 Assignments: Data processing assignments --Critique genomic processing results Modules: 8, 9 Assignments: reporting and project discussion

Prerequisites

  • Introduction to Genetics and Human Disease (BIOL-40280): Provides an understanding of genetics
  • Python for Informatics (CSE-41225: Provides an understanding of programming)

How to Get Help?

  1. Is there a possibility the answer to my question is available online? If the answer is available, post the original question and answer you found as an Issue with the 'question' label. Be sure to close the issue with the answer you found (including relevant resource links) after opening it. You will need a Github account to do this.
  2. If the answer is not available online, post it as a question-labeled Issue and pend for a response from the Instructors or TAs. Who knows, perhaps another student had also encountered the same issue and can answer it too!
  3. If the obstacle is something more personal, such as a specific installation issue unique to your computer alone, reach out to the instructors. Any question is better than no question at all, and often we all learn from them (not just students)!

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Fall 2022 UCSD Extension Course (167347 Processing Actionable Data in Genomics)

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