Evaluation Notes

This page is out of data - updates pending

Split Gal4 line comparisons

Distance transform metrics

Template	ants	antsYang	antsItk4	cmtk	cmtkHideo	cmtkGreg
JFRC2010	rds	rds	rds	rds	rds	rds
JFRC2013	r		p	rds	rds	rds
JFRC2013 lo	rds	rds	rds	rds	rds	rds
antsGrp	r			rds	rds	rds
antsGrp lo	rds	rds	rds	rds	rds	rds
cmtkGrp
cmtkGrp lo
texture	w	w	w	w	w	w
tefor	r	r	r	r	r	r

Key:

• p: "registration partially done or in progress"
• r: "registration done"
• d: "distance transform done"
• s: "distance transform stats done"
• w: "waiting on some decision"

Notes

• Tefor registration looks much worse than it should
  • Unclear why, but could due to different dynamic range
    • Yes, this seems to be the case.

What evaluation images belong to the same line?

From Hideo's email:

20161102_32_C1: JRC_SS23204
20161102_32_C3: JRC_SS23204
20161102_32_D1: JRC_SS23206
20161102_32_D2: JRC_SS23206
20161102_32_E1: JRC_SS23208
20161102_32_E3: JRC_SS23208
20161220_31_I1: JRC_SS30756
20161220_31_I2: JRC_SS30756
20161220_31_I3: JRC_SS30756
20161220_32_C1: JRC_SS30777
20161220_32_C3: JRC_SS30777
20170223_32_A2: JRC_SS33007
20170223_32_A3: JRC_SS33007
20170223_32_A6: JRC_SS33007
20170223_32_E1: JRC_SS33017
20170223_32_E2: JRC_SS33017
20170223_32_E3: JRC_SS33017
20170301_31_B1: JRC_SS32529
20170301_31_B3: JRC_SS32529
20170301_31_B5: JRC_SS32529

Which suggests to me the following grouping of images to lines:

Line 
JRC_SS23204 | 20161102_32_C1  20161102_32_C3
JRC_SS23206 | 20161102_32_D1  20161102_32_D2
JRC_SS23208 | 20161102_32_E1  20161102_32_E3
JRC_SS30756 | 20161220_31_I1  20161220_31_I2  20161220_31_I3
JRC_SS30777 | 20161220_32_C1  20161220_32_C3
JRC_SS33007 | 20170223_32_A2  20170223_32_A3  20170223_32_A6
JRC_SS33017 | 20170223_32_E1  20170223_32_E2  20170223_32_E3
JRC_SS32529 | 20170301_31_B1  20170301_31_B3  20170301_31_B5

However, the first five of these lines look very similar, see /groups/saalfeld/home/bogovicj/dev/template/template-building/visualization/mosaic/Montage.png