Feature/24 refactor galist #25

s-martin · 2019-09-11T20:38:09Z

see #24

also #8 is implemented here

…randtest_to_test

added first unit test for refactoring

# Conflicts: # test/CMakeLists.txt

…alist # Conflicts: # test/CMakeLists.txt

…refactor_galist

…tin/galib into feature/24_refactor_galist

…_galist

github-advanced-security

Found 100 potential problems in the proposed changes. Check the Files changed tab for more details.

github-advanced-security

Found 100 potential problems in the proposed changes. Check the Files changed tab for more details.

github-advanced-security

Found 100 potential problems in the proposed changes. Check the Files changed tab for more details.

github-advanced-security

Found 100 potential problems in the proposed changes. Check the Files changed tab for more details.

github-advanced-security

Found 100 potential problems in the proposed changes. Check the Files changed tab for more details.

github-advanced-security

Found 100 potential problems in the proposed changes. Check the Files changed tab for more details.

github-actions · 2023-04-11T22:17:51Z

Test Results

43 tests +15 40 ✔️ +12 1s ⏱️ ±0s
  1 suites ±  0   0 💤 ±  0
  1 files ±  0   3 ❌ +  3

For more details on these failures, see this check.

Results for commit 800662e. ± Comparison against base commit b3de7e3.

♻️ This comment has been updated with latest results.

github-actions · 2023-04-15T22:30:40Z

Coverage Report

Coverage after merging feature/24_refactor_galist into master will be

35.42%	▴ NaN%

Coverage Report

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
ga
GA1DArrayGenome.hpp	0%	100%	0%	0%	100, 1000, 1002–1004, 1007, 1009, 101, 1010, 1013–1014, 1016, 1018–1019, 102, 1021, 1023–1024, 1026–1027, 1043, 1045–1046, 1048–1053, 1056–1059, 1062–1064, 1073, 1075, 1077, 1079, 1081–1087, 1090, 1092–1095, 1098, 1100, 1102–1106, 1108–1110, 1112–1114, 1122, 1126, 1130–1133, 116, 1178, 1180–1184, 119, 1190, 1192–1196, 1198–1199, 120, 1200, 1202–1204, 1209, 1211, 1213–1214, 1216–1217, 1219, 122, 1220, 1222, 1224–1225, 1231, 1233–1234, 1237, 124, 126–127, 1270–1271, 1273–1274, 1276, 1278–1279, 1281, 1283–1284, 129, 1294, 1296, 1299, 130, 1301–1305, 1307–1308, 131, 1310, 1312, 1314, 1322, 1324, 1327, 1329, 133, 1340, 1342–1344, 1346–1347, 1349, 135, 1352, 1354, 1357, 137–138, 142–143, 149–164, 166, 168, 170–171, 175–178, 180, 183, 193, 196–199, 201, 205, 207–208, 210–211, 213–215, 217, 219, 221–222, 224–225, 227, 229, 233–238, 241–244, 246–248, 250–252, 254, 256–257, 259, 261, 263–264, 268–272, 275, 277–278, 282–283, 286, 289, 298, 301–304, 306, 312, 314–315, 317–318, 320–322, 324, 326, 328–333, 335–338, 340–341, 343, 347–352, 354–359, 361–362, 365–370, 372–374, 376–378, 380, 382–383, 385, 387, 389–394, 396–399, 403–408, 410–415, 417, 420, 422–424, 428–430, 433, 436, 44, 443, 446–449, 451, 454, 456–459, 461, 463–466, 468, 470–471, 476–482, 485–487, 489–491, 493, 495, 497–498, 500, 502, 507–511, 514, 517, 52, 526, 529–532, 534–538, 54, 541, 543, 545, 548, 550–551, 553–554, 556–557, 56, 560, 562–563, 565–566, 569, 57, 572–574, 576–578, 581, 583–584, 588–589, 59, 592–593, 595–596, 599, 60, 602, 605, 61, 620, 622–623, 625–629, 63, 632, 634–635, 638, 64, 640–641, 644, 647, 649–652, 655, 657–659, 66, 662–666, 671, 673, 675–677, 68, 682, 685, 687–689, 69, 690, 693, 695–697, 700–704, 709, 711, 713–715, 719–721, 723–725, 728, 730–731, 735–736, 739–740, 742–745, 747, 749, 75, 750–751, 754–758, 76, 760, 762, 764–766, 770, 773, 78, 796, 799–800, 802–803, 805, 807–808, 811, 813–815, 817–818, 820–822, 824, 826, 828–831, 836–838, 840, 842–844, 846, 848, 850–853, 858–860, 862–864, 866, 869, 871–872, 876–877, 880–882, 884–886, 888, 890, 892–895, 899, 90, 900–901, 903–904, 906, 919, 92, 921, 923–927, 93, 932–933, 935–936, 938, 940–941, 943, 945–947, 949, 95, 951, 953–954, 956, 96, 960–962, 964, 97, 976, 978–979, 98, 980–981, 983–987, 99, 992, 994–995
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github-actions · 2023-04-16T19:21:00Z

Coverage Report

Coverage after merging feature/24_refactor_galist into master will be

35.42%	▴ NaN%

Coverage Report

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
ga
GA1DArrayGenome.hpp	0%	100%	0%	0%	100, 1000, 1002–1004, 1007, 1009, 101, 1010, 1013–1014, 1016, 1018–1019, 102, 1021, 1023–1024, 1026–1027, 1043, 1045–1046, 1048–1053, 1056–1059, 1062–1064, 1073, 1075, 1077, 1079, 1081–1087, 1090, 1092–1095, 1098, 1100, 1102–1106, 1108–1110, 1112–1114, 1122, 1126, 1130–1133, 116, 1178, 1180–1184, 119, 1190, 1192–1196, 1198–1199, 120, 1200, 1202–1204, 1209, 1211, 1213–1214, 1216–1217, 1219, 122, 1220, 1222, 1224–1225, 1231, 1233–1234, 1237, 124, 126–127, 1270–1271, 1273–1274, 1276, 1278–1279, 1281, 1283–1284, 129, 1294, 1296, 1299, 130, 1301–1305, 1307–1308, 131, 1310, 1312, 1314, 1322, 1324, 1327, 1329, 133, 1340, 1342–1344, 1346–1347, 1349, 135, 1352, 1354, 1357, 137–138, 142–143, 149–164, 166, 168, 170–171, 175–178, 180, 183, 193, 196–199, 201, 205, 207–208, 210–211, 213–215, 217, 219, 221–222, 224–225, 227, 229, 233–238, 241–244, 246–248, 250–252, 254, 256–257, 259, 261, 263–264, 268–272, 275, 277–278, 282–283, 286, 289, 298, 301–304, 306, 312, 314–315, 317–318, 320–322, 324, 326, 328–333, 335–338, 340–341, 343, 347–352, 354–359, 361–362, 365–370, 372–374, 376–378, 380, 382–383, 385, 387, 389–394, 396–399, 403–408, 410–415, 417, 420, 422–424, 428–430, 433, 436, 44, 443, 446–449, 451, 454, 456–459, 461, 463–466, 468, 470–471, 476–482, 485–487, 489–491, 493, 495, 497–498, 500, 502, 507–511, 514, 517, 52, 526, 529–532, 534–538, 54, 541, 543, 545, 548, 550–551, 553–554, 556–557, 56, 560, 562–563, 565–566, 569, 57, 572–574, 576–578, 581, 583–584, 588–589, 59, 592–593, 595–596, 599, 60, 602, 605, 61, 620, 622–623, 625–629, 63, 632, 634–635, 638, 64, 640–641, 644, 647, 649–652, 655, 657–659, 66, 662–666, 671, 673, 675–677, 68, 682, 685, 687–689, 69, 690, 693, 695–697, 700–704, 709, 711, 713–715, 719–721, 723–725, 728, 730–731, 735–736, 739–740, 742–745, 747, 749, 75, 750–751, 754–758, 76, 760, 762, 764–766, 770, 773, 78, 796, 799–800, 802–803, 805, 807–808, 811, 813–815, 817–818, 820–822, 824, 826, 828–831, 836–838, 840, 842–844, 846, 848, 850–853, 858–860, 862–864, 866, 869, 871–872, 876–877, 880–882, 884–886, 888, 890, 892–895, 899, 90, 900–901, 903–904, 906, 919, 92, 921, 923–927, 93, 932–933, 935–936, 938, 940–941, 943, 945–947, 949, 95, 951, 953–954, 956, 96, 960–962, 964, 97, 976, 978–979, 98, 980–981, 983–987, 99, 992, 994–995
GA1DBinStrGenome.C	24.94%	100%	36.36%	24.24%	112, 121, 129, 131, 133, 135, 156, 159, 161, 163–164, 166, 170, 172, 174–176, 179, 184, 186, 188, 190, 199, 202, 204–205, 207–209, 211, 213, 215, 217, 230, 234, 237, 239, 241, 243–246, 248, 250, 271, 273–276, 279, 281–284, 302, 320, 322, 324, 340, 344, 346–347, 349, 351, 353, 355–356, 358, 360, 367, 372, 374, 376, 378, 380–381, 383–384, 386, 388, 390–391, 395–396, 402, 404, 406–408, 410, 412–413, 415, 417–418, 420, 422–425, 428–429, 431, 433, 435, 441–443, 445, 448, 451, 47–48, 484, 486, 49, 491–492, 494, 496, 500–505, 51, 518, 52, 525, 527, 53, 534–538, 563, 568, 570, 572, 576, 578–579, 581–582, 584–585, 587, 589, 591–593, 595, 597–598, 60, 600–603, 605–606, 608, 610, 614–616, 618, 62, 620–621, 623–625, 627, 629, 63, 630, 632–633, 636–641, 643–645, 648–649, 65, 651, 653, 655, 657, 659–661, 663, 665–666, 668–671, 675–677, 679, 681–682, 684–686, 688, 69, 690–691, 693, 696, 698–699, 70, 700, 704–706, 709, 71, 712, 719, 724, 726, 728, 73, 731, 733–734, 736–737, 739, 741–744, 746, 748–749, 755–757,

…refactor_galist

github-actions · 2023-04-16T19:23:43Z

Coverage Report

Coverage after merging feature/24_refactor_galist into master will be

35.42%	▴ NaN%

Coverage Report

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
ga
GA1DArrayGenome.hpp	0%	100%	0%	0%	100, 1000, 1002–1004, 1007, 1009, 101, 1010, 1013–1014, 1016, 1018–1019, 102, 1021, 1023–1024, 1026–1027, 1043, 1045–1046, 1048–1053, 1056–1059, 1062–1064, 1073, 1075, 1077, 1079, 1081–1087, 1090, 1092–1095, 1098, 1100, 1102–1106, 1108–1110, 1112–1114, 1122, 1126, 1130–1133, 116, 1178, 1180–1184, 119, 1190, 1192–1196, 1198–1199, 120, 1200, 1202–1204, 1209, 1211, 1213–1214, 1216–1217, 1219, 122, 1220, 1222, 1224–1225, 1231, 1233–1234, 1237, 124, 126–127, 1270–1271, 1273–1274, 1276, 1278–1279, 1281, 1283–1284, 129, 1294, 1296, 1299, 130, 1301–1305, 1307–1308, 131, 1310, 1312, 1314, 1322, 1324, 1327, 1329, 133, 1340, 1342–1344, 1346–1347, 1349, 135, 1352, 1354, 1357, 137–138, 142–143, 149–164, 166, 168, 170–171, 175–178, 180, 183, 193, 196–199, 201, 205, 207–208, 210–211, 213–215, 217, 219, 221–222, 224–225, 227, 229, 233–238, 241–244, 246–248, 250–252, 254, 256–257, 259, 261, 263–264, 268–272, 275, 277–278, 282–283, 286, 289, 298, 301–304, 306, 312, 314–315, 317–318, 320–322, 324, 326, 328–333, 335–338, 340–341, 343, 347–352, 354–359, 361–362, 365–370, 372–374, 376–378, 380, 382–383, 385, 387, 389–394, 396–399, 403–408, 410–415, 417, 420, 422–424, 428–430, 433, 436, 44, 443, 446–449, 451, 454, 456–459, 461, 463–466, 468, 470–471, 476–482, 485–487, 489–491, 493, 495, 497–498, 500, 502, 507–511, 514, 517, 52, 526, 529–532, 534–538, 54, 541, 543, 545, 548, 550–551, 553–554, 556–557, 56, 560, 562–563, 565–566, 569, 57, 572–574, 576–578, 581, 583–584, 588–589, 59, 592–593, 595–596, 599, 60, 602, 605, 61, 620, 622–623, 625–629, 63, 632, 634–635, 638, 64, 640–641, 644, 647, 649–652, 655, 657–659, 66, 662–666, 671, 673, 675–677, 68, 682, 685, 687–689, 69, 690, 693, 695–697, 700–704, 709, 711, 713–715, 719–721, 723–725, 728, 730–731, 735–736, 739–740, 742–745, 747, 749, 75, 750–751, 754–758, 76, 760, 762, 764–766, 770, 773, 78, 796, 799–800, 802–803, 805, 807–808, 811, 813–815, 817–818, 820–822, 824, 826, 828–831, 836–838, 840, 842–844, 846, 848, 850–853, 858–860, 862–864, 866, 869, 871–872, 876–877, 880–882, 884–886, 888, 890, 892–895, 899, 90, 900–901, 903–904, 906, 919, 92, 921, 923–927, 93, 932–933, 935–936, 938, 940–941, 943, 945–947, 949, 95, 951, 953–954, 956, 96, 960–962, 964, 97, 976, 978–979, 98, 980–981, 983–987, 99, 992, 994–995
GA1DBinStrGenome.C	24.94%	100%	36.36%	24.24%	112, 121, 129, 131, 133, 135, 156, 159, 161, 163–164, 166, 170, 172, 174–176, 179, 184, 186, 188, 190, 199, 202, 204–205, 207–209, 211, 213, 215, 217, 230, 234, 237, 239, 241, 243–246, 248, 250, 271, 273–276, 279, 281–284, 302, 320, 322, 324, 340, 344, 346–347, 349, 351, 353, 355–356, 358, 360, 367, 372, 374, 376, 378, 380–381, 383–384, 386, 388, 390–391, 395–396, 402, 404, 406–408, 410, 412–413, 415, 417–418, 420, 422–425, 428–429, 431, 433, 435, 441–443, 445, 448, 451, 47–48, 484, 486, 49, 491–492, 494, 496, 500–505, 51, 518, 52, 525, 527, 53, 534–538, 563, 568, 570, 572, 576, 578–579, 581–582, 584–585, 587, 589, 591–593, 595, 597–598, 60, 600–603, 605–606, 608, 610, 614–616, 618, 62, 620–621, 623–625, 627, 629, 63, 630, 632–633, 636–641, 643–645, 648–649, 65, 651, 653, 655, 657, 659–661, 663, 665–666, 668–671, 675–677, 679, 681–682, 684–686, 688, 69, 690–691, 693, 696, 698–699, 70, 700, 704–706, 709, 71, 712, 719, 724, 726, 728, 73, 731, 733–734, 736–737, 739, 741–744, 746, 748–749, 755–757,

github-actions · 2023-04-16T20:13:59Z

Coverage Report

Coverage after merging feature/24_refactor_galist into master will be

35.42%	▴ NaN%

Coverage Report

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
ga
GA1DArrayGenome.hpp	0%	100%	0%	0%	100, 1000, 1002–1004, 1007, 1009, 101, 1010, 1013–1014, 1016, 1018–1019, 102, 1021, 1023–1024, 1026–1027, 1043, 1045–1046, 1048–1053, 1056–1059, 1062–1064, 1073, 1075, 1077, 1079, 1081–1087, 1090, 1092–1095, 1098, 1100, 1102–1106, 1108–1110, 1112–1114, 1122, 1126, 1130–1133, 116, 1178, 1180–1184, 119, 1190, 1192–1196, 1198–1199, 120, 1200, 1202–1204, 1209, 1211, 1213–1214, 1216–1217, 1219, 122, 1220, 1222, 1224–1225, 1231, 1233–1234, 1237, 124, 126–127, 1270–1271, 1273–1274, 1276, 1278–1279, 1281, 1283–1284, 129, 1294, 1296, 1299, 130, 1301–1305, 1307–1308, 131, 1310, 1312, 1314, 1322, 1324, 1327, 1329, 133, 1340, 1342–1344, 1346–1347, 1349, 135, 1352, 1354, 1357, 137–138, 142–143, 149–164, 166, 168, 170–171, 175–178, 180, 183, 193, 196–199, 201, 205, 207–208, 210–211, 213–215, 217, 219, 221–222, 224–225, 227, 229, 233–238, 241–244, 246–248, 250–252, 254, 256–257, 259, 261, 263–264, 268–272, 275, 277–278, 282–283, 286, 289, 298, 301–304, 306, 312, 314–315, 317–318, 320–322, 324, 326, 328–333, 335–338, 340–341, 343, 347–352, 354–359, 361–362, 365–370, 372–374, 376–378, 380, 382–383, 385, 387, 389–394, 396–399, 403–408, 410–415, 417, 420, 422–424, 428–430, 433, 436, 44, 443, 446–449, 451, 454, 456–459, 461, 463–466, 468, 470–471, 476–482, 485–487, 489–491, 493, 495, 497–498, 500, 502, 507–511, 514, 517, 52, 526, 529–532, 534–538, 54, 541, 543, 545, 548, 550–551, 553–554, 556–557, 56, 560, 562–563, 565–566, 569, 57, 572–574, 576–578, 581, 583–584, 588–589, 59, 592–593, 595–596, 599, 60, 602, 605, 61, 620, 622–623, 625–629, 63, 632, 634–635, 638, 64, 640–641, 644, 647, 649–652, 655, 657–659, 66, 662–666, 671, 673, 675–677, 68, 682, 685, 687–689, 69, 690, 693, 695–697, 700–704, 709, 711, 713–715, 719–721, 723–725, 728, 730–731, 735–736, 739–740, 742–745, 747, 749, 75, 750–751, 754–758, 76, 760, 762, 764–766, 770, 773, 78, 796, 799–800, 802–803, 805, 807–808, 811, 813–815, 817–818, 820–822, 824, 826, 828–831, 836–838, 840, 842–844, 846, 848, 850–853, 858–860, 862–864, 866, 869, 871–872, 876–877, 880–882, 884–886, 888, 890, 892–895, 899, 90, 900–901, 903–904, 906, 919, 92, 921, 923–927, 93, 932–933, 935–936, 938, 940–941, 943, 945–947, 949, 95, 951, 953–954, 956, 96, 960–962, 964, 97, 976, 978–979, 98, 980–981, 983–987, 99, 992, 994–995
GA1DBinStrGenome.C	24.94%	100%	36.36%	24.24%	112, 121, 129, 131, 133, 135, 156, 159, 161, 163–164, 166, 170, 172, 174–176, 179, 184, 186, 188, 190, 199, 202, 204–205, 207–209, 211, 213, 215, 217, 230, 234, 237, 239, 241, 243–246, 248, 250, 271, 273–276, 279, 281–284, 302, 320, 322, 324, 340, 344, 346–347, 349, 351, 353, 355–356, 358, 360, 367, 372, 374, 376, 378, 380–381, 383–384, 386, 388, 390–391, 395–396, 402, 404, 406–408, 410, 412–413, 415, 417–418, 420, 422–425, 428–429, 431, 433, 435, 441–443, 445, 448, 451, 47–48, 484, 486, 49, 491–492, 494, 496, 500–505, 51, 518, 52, 525, 527, 53, 534–538, 563, 568, 570, 572, 576, 578–579, 581–582, 584–585, 587, 589, 591–593, 595, 597–598, 60, 600–603, 605–606, 608, 610, 614–616, 618, 62, 620–621, 623–625, 627, 629, 63, 630, 632–633, 636–641, 643–645, 648–649, 65, 651, 653, 655, 657, 659–661, 663, 665–666, 668–671, 675–677, 679, 681–682, 684–686, 688, 69, 690–691, 693, 696, 698–699, 70, 700, 704–706, 709, 71, 712, 719, 724, 726, 728, 73, 731, 733–734, 736–737, 739, 741–744, 746, 748–749, 755–757,

github-actions · 2023-04-16T20:32:46Z

Coverage Report

Coverage after merging feature/24_refactor_galist into master will be

35.59%	▴ NaN%

Coverage Report

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
ga
GA1DArrayGenome.hpp	0%	100%	0%	0%	100, 1000, 1002–1004, 1007, 1009, 101, 1010, 1013–1014, 1016, 1018–1019, 102, 1021, 1023–1024, 1026–1027, 1043, 1045–1046, 1048–1053, 1056–1059, 1062–1064, 1073, 1075, 1077, 1079, 1081–1087, 1090, 1092–1095, 1098, 1100, 1102–1106, 1108–1110, 1112–1114, 1122, 1126, 1130–1133, 116, 1178, 1180–1184, 119, 1190, 1192–1196, 1198–1199, 120, 1200, 1202–1204, 1209, 1211, 1213–1214, 1216–1217, 1219, 122, 1220, 1222, 1224–1225, 1231, 1233–1234, 1237, 124, 126–127, 1270–1271, 1273–1274, 1276, 1278–1279, 1281, 1283–1284, 129, 1294, 1296, 1299, 130, 1301–1305, 1307–1308, 131, 1310, 1312, 1314, 1322, 1324, 1327, 1329, 133, 1340, 1342–1344, 1346–1347, 1349, 135, 1352, 1354, 1357, 137–138, 142–143, 149–164, 166, 168, 170–171, 175–178, 180, 183, 193, 196–199, 201, 205, 207–208, 210–211, 213–215, 217, 219, 221–222, 224–225, 227, 229, 233–238, 241–244, 246–248, 250–252, 254, 256–257, 259, 261, 263–264, 268–272, 275, 277–278, 282–283, 286, 289, 298, 301–304, 306, 312, 314–315, 317–318, 320–322, 324, 326, 328–333, 335–338, 340–341, 343, 347–352, 354–359, 361–362, 365–370, 372–374, 376–378, 380, 382–383, 385, 387, 389–394, 396–399, 403–408, 410–415, 417, 420, 422–424, 428–430, 433, 436, 44, 443, 446–449, 451, 454, 456–459, 461, 463–466, 468, 470–471, 476–482, 485–487, 489–491, 493, 495, 497–498, 500, 502, 507–511, 514, 517, 52, 526, 529–532, 534–538, 54, 541, 543, 545, 548, 550–551, 553–554, 556–557, 56, 560, 562–563, 565–566, 569, 57, 572–574, 576–578, 581, 583–584, 588–589, 59, 592–593, 595–596, 599, 60, 602, 605, 61, 620, 622–623, 625–629, 63, 632, 634–635, 638, 64, 640–641, 644, 647, 649–652, 655, 657–659, 66, 662–666, 671, 673, 675–677, 68, 682, 685, 687–689, 69, 690, 693, 695–697, 700–704, 709, 711, 713–715, 719–721, 723–725, 728, 730–731, 735–736, 739–740, 742–745, 747, 749, 75, 750–751, 754–758, 76, 760, 762, 764–766, 770, 773, 78, 796, 799–800, 802–803, 805, 807–808, 811, 813–815, 817–818, 820–822, 824, 826, 828–831, 836–838, 840, 842–844, 846, 848, 850–853, 858–860, 862–864, 866, 869, 871–872, 876–877, 880–882, 884–886, 888, 890, 892–895, 899, 90, 900–901, 903–904, 906, 919, 92, 921, 923–927, 93, 932–933, 935–936, 938, 940–941, 943, 945–947, 949, 95, 951, 953–954, 956, 96, 960–962, 964, 97, 976, 978–979, 98, 980–981, 983–987, 99, 992, 994–995
GA1DBinStrGenome.C	24.94%	100%	36.36%	24.24%	112, 121, 129, 131, 133, 135, 156, 159, 161, 163–164, 166, 170, 172, 174–176, 179, 184, 186, 188, 190, 199, 202, 204–205, 207–209, 211, 213, 215, 217, 230, 234, 237, 239, 241, 243–246, 248, 250, 271, 273–276, 279, 281–284, 302, 320, 322, 324, 340, 344, 346–347, 349, 351, 353, 355–356, 358, 360, 367, 372, 374, 376, 378, 380–381, 383–384, 386, 388, 390–391, 395–396, 402, 404, 406–408, 410, 412–413, 415, 417–418, 420, 422–425, 428–429, 431, 433, 435, 441–443, 445, 448, 451, 47–48, 484, 486, 49, 491–492, 494, 496, 500–505, 51, 518, 52, 525, 527, 53, 534–538, 563, 568, 570, 572, 576, 578–579, 581–582, 584–585, 587, 589, 591–593, 595, 597–598, 60, 600–603, 605–606, 608, 610, 614–616, 618, 62, 620–621, 623–625, 627, 629, 63, 630, 632–633, 636–641, 643–645, 648–649, 65, 651, 653, 655, 657, 659–661, 663, 665–666, 668–671, 675–677, 679, 681–682, 684–686, 688, 69, 690–691, 693, 696, 698–699, 70, 700, 704–706, 709, 71, 712, 719, 724, 726, 728, 73, 731, 733–734, 736–737, 739, 741–744, 746, 748–749, 755–757,

github-actions · 2023-04-22T20:49:55Z

lcov Coverage Report

Coverage after merging feature/24_refactor_galist into master will be

35.59%	▴ NaN%

Coverage Report

File	Stmts	Branches	Funcs	Lines	Uncovered Lines
ga
GA1DArrayGenome.hpp	0%	100%	0%	0%	100, 1000, 1002–1004, 1007, 1009, 101, 1010, 1013–1014, 1016, 1018–1019, 102, 1021, 1023–1024, 1026–1027, 1043, 1045–1046, 1048–1053, 1056–1059, 1062–1064, 1073, 1075, 1077, 1079, 1081–1087, 1090, 1092–1095, 1098, 1100, 1102–1106, 1108–1110, 1112–1114, 1122, 1126, 1130–1133, 116, 1178, 1180–1184, 119, 1190, 1192–1196, 1198–1199, 120, 1200, 1202–1204, 1209, 1211, 1213–1214, 1216–1217, 1219, 122, 1220, 1222, 1224–1225, 1231, 1233–1234, 1237, 124, 126–127, 1270–1271, 1273–1274, 1276, 1278–1279, 1281, 1283–1284, 129, 1294, 1296, 1299, 130, 1301–1305, 1307–1308, 131, 1310, 1312, 1314, 1322, 1324, 1327, 1329, 133, 1340, 1342–1344, 1346–1347, 1349, 135, 1352, 1354, 1357, 137–138, 142–143, 149–164, 166, 168, 170–171, 175–178, 180, 183, 193, 196–199, 201, 205, 207–208, 210–211, 213–215, 217, 219, 221–222, 224–225, 227, 229, 233–238, 241–244, 246–248, 250–252, 254, 256–257, 259, 261, 263–264, 268–272, 275, 277–278, 282–283, 286, 289, 298, 301–304, 306, 312, 314–315, 317–318, 320–322, 324, 326, 328–333, 335–338, 340–341, 343, 347–352, 354–359, 361–362, 365–370, 372–374, 376–378, 380, 382–383, 385, 387, 389–394, 396–399, 403–408, 410–415, 417, 420, 422–424, 428–430, 433, 436, 44, 443, 446–449, 451, 454, 456–459, 461, 463–466, 468, 470–471, 476–482, 485–487, 489–491, 493, 495, 497–498, 500, 502, 507–511, 514, 517, 52, 526, 529–532, 534–538, 54, 541, 543, 545, 548, 550–551, 553–554, 556–557, 56, 560, 562–563, 565–566, 569, 57, 572–574, 576–578, 581, 583–584, 588–589, 59, 592–593, 595–596, 599, 60, 602, 605, 61, 620, 622–623, 625–629, 63, 632, 634–635, 638, 64, 640–641, 644, 647, 649–652, 655, 657–659, 66, 662–666, 671, 673, 675–677, 68, 682, 685, 687–689, 69, 690, 693, 695–697, 700–704, 709, 711, 713–715, 719–721, 723–725, 728, 730–731, 735–736, 739–740, 742–745, 747, 749, 75, 750–751, 754–758, 76, 760, 762, 764–766, 770, 773, 78, 796, 799–800, 802–803, 805, 807–808, 811, 813–815, 817–818, 820–822, 824, 826, 828–831, 836–838, 840, 842–844, 846, 848, 850–853, 858–860, 862–864, 866, 869, 871–872, 876–877, 880–882, 884–886, 888, 890, 892–895, 899, 90, 900–901, 903–904, 906, 919, 92, 921, 923–927, 93, 932–933, 935–936, 938, 940–941, 943, 945–947, 949, 95, 951, 953–954, 956, 96, 960–962, 964, 97, 976, 978–979, 98, 980–981, 983–987, 99, 992, 994–995
GA1DBinStrGenome.C	24.94%	100%	36.36%	24.24%	112, 121, 129, 131, 133, 135, 156, 159, 161, 163–164, 166, 170, 172, 174–176, 179, 184, 186, 188, 190, 199, 202, 204–205, 207–209, 211, 213, 215, 217, 230, 234, 237, 239, 241, 243–246, 248, 250, 271, 273–276, 279, 281–284, 302, 320, 322, 324, 340, 344, 346–347, 349, 351, 353, 355–356, 358, 360, 367, 372, 374, 376, 378, 380–381, 383–384, 386, 388, 390–391, 395–396, 402, 404, 406–408, 410, 412–413, 415, 417–418, 420, 422–425, 428–429, 431, 433, 435, 441–443, 445, 448, 451, 47–48, 484, 486, 49, 491–492, 494, 496, 500–505, 51, 518, 52, 525, 527, 53, 534–538, 563, 568, 570, 572, 576, 578–579, 581–582, 584–585, 587, 589, 591–593, 595, 597–598, 60, 600–603, 605–606, 608, 610, 614–616, 618, 62, 620–621, 623–625, 627, 629, 63, 630, 632–633, 636–641, 643–645, 648–649, 65, 651, 653, 655, 657, 659–661, 663, 665–666, 668–671, 675–677, 679, 681–682, 684–686, 688, 69, 690–691, 693, 696, 698–699, 70, 700, 704–706, 709, 71, 712, 719, 724, 726, 728, 73, 731, 733–734, 736–737, 739, 741–744, 746, 748–749, 755–757,

…refactor_galist # Conflicts: # test/CMakeLists.txt

…tin/galib into feature/24_refactor_galist # Conflicts: # test/CMakeLists.txt

s-martin added 13 commits July 12, 2019 21:12

WIP - started using Randtest as unit test

339ab93

Merge remote-tracking branch 'remotes/origin/master' into feature/11_…

8d1e9bb

…randtest_to_test

#24

b02825c

added first unit test for refactoring

fixed comment

d265a89

added tests for GAList

94a9e95

Merge branch 'master' into feature/24_refactor_galist

45c5107

added test for copy, fails because bug in original code

f922782

Merge branch 'master' into feature/11_randtest_to_test

bfaf03b

Merge branch 'master' into feature/24_refactor_galist

9bffb73

Merge branch 'master' into feature/24_refactor_galist

b5aa6a4

Merge branch 'master' into feature/11_randtest_to_test

0f951a8

Merge branch 'master' into feature/11_randtest_to_test

a32dca6

Merge branch 'master' into feature/24_refactor_galist

2d892a7

s-martin mentioned this pull request Nov 7, 2019

Make unit tests from all examples #12

Open

s-martin added 3 commits November 8, 2019 20:57

Merge branch 'master' into feature/24_refactor_galist

afc182c

# Conflicts: # test/CMakeLists.txt

fixed merge error

690886e

Merge branch 'master' into feature/11_randtest_to_test

b56b244

# Conflicts: # test/CMakeLists.txt

s-martin linked an issue Mar 31, 2021 that may be closed by this pull request

Rework GAList with std::list #24

Open

s-martin added the enhancement New feature or request label Apr 16, 2021

s-martin and others added 7 commits April 17, 2021 22:54

Merge branch 'master' into feature/11_randtest_to_test

7d7d379

Merge branch 'feature/11_randtest_to_test' into feature/24_refactor_g…

9c57c04

…alist # Conflicts: # test/CMakeLists.txt

Update ci-linux.yml

693b379

Merge remote-tracking branch 'remotes/origin/master' into feature/24_…

110ce3b

…refactor_galist

Merge branch 'feature/24_refactor_galist' of https://github.com/s-mar…

0fc93fe

…tin/galib into feature/24_refactor_galist

Merge remote-tracking branch 'origin/master' into feature/24_refactor…

4c72295

…_galist

Merge remote-tracking branch 'origin/master' into feature/24_refactor…

d51292a

…_galist

github-advanced-security bot found potential problems Jun 9, 2022

View reviewed changes

github-advanced-security bot found potential problems Jun 16, 2022

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github-advanced-security bot found potential problems Jun 23, 2022

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s-martin added 7 commits April 1, 2023 16:53

Merge branch 'master' into feature/24_refactor_galist

e647e34

Pass arguments to native tool

ba7011e

Update ci-linux.yml

ef03f34

Check why tests fail

3c9f4db

More verbose on failed tests

335fb0b

Update ci-linux.yml

428168d

Merge branch 'master' into feature/24_refactor_galist

881f5b5

fix some randtest unit tests

dd7a66a

s-martin mentioned this pull request Apr 15, 2023

move randtest to unit tests #17

Closed

s-martin linked an issue Apr 15, 2023 that may be closed by this pull request

Move randtest.C to tests #8

Open

fix the test

13a0178

fix bug in error handling of swap method

1ae150e

Merge remote-tracking branch 'remotes/origin/master' into feature/24_…

5d81275

…refactor_galist

add more tests and fix some comments

431c4ec

added insert test case

c583228

Merge branch 'master' into feature/24_refactor_galist

7273faa

s-martin and others added 5 commits May 1, 2023 20:25

Merge branch 'master' into feature/24_refactor_galist

66ecea2

add output

747aa11

add more outputs

500580a

Merge remote-tracking branch 'remotes/origin/master' into feature/24_…

c21c549

…refactor_galist # Conflicts: # test/CMakeLists.txt

Merge branch 'feature/24_refactor_galist' of https://github.com/s-mar…

800662e

…tin/galib into feature/24_refactor_galist # Conflicts: # test/CMakeLists.txt

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Feature/24 refactor galist #25

Feature/24 refactor galist #25

s-martin commented Sep 11, 2019 •

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Feature/24 refactor galist #25

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Test Results

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Coverage Report

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lcov Coverage Report

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