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Illustrated pipeline overview

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Ryan Wick edited this page Oct 21, 2024 · 1 revision

Illustrated overview of Autocycler pipeline

Toggle table of contents Pages 24

Home
Autocycler cluster
Autocycler combine
Autocycler compress
Autocycler decompress
Autocycler dotplot
Autocycler resolve
Autocycler subsample
Autocycler table
Autocycler trim
Demo dataset
FAQ and miscellaneous tips
Fully automated assembly
Generating input assemblies
Genome size estimation
Glossary
How to assess an Autocycler assembly
Illustrated pipeline overview
Linear sequences
Manually curated assembly
Metrics
Parallelising input assemblies
Software requirements and installation
Why didn't my assembly go well?

Overview

Home
Software requirements and installation
Illustrated pipeline overview

Quick start

Fully automated assembly
Manually curated assembly
Demo dataset

Main Autocycler steps

Step 1: Autocycler subsample
Step 2: Generating input assemblies
Step 3: Autocycler compress
Step 4: Autocycler cluster
Step 5: Autocycler trim
Step 6: Autocycler resolve
Step 7: Autocycler combine

Assessing Autocycler assemblies

How to assess an Autocycler assembly
Why didn't my assembly go well?
Metrics

Additional commands

Autocycler decompress
Autocycler dotplot
Autocycler table

Other pages

Linear sequences
Genome size estimation
Parallelising input assemblies
FAQ and miscellaneous tips
Glossary

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