GitHub - rquiroga7/LineageExplorer: Estimate growth rate advantage of SARS-CoV2 variants of concern using multinomial fits and GISAID and COG-UK data

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Estimate growth rate advantage of SARS-CoV2 variants of concern using multinomial fits and GISAID and COG-UK data

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Name		Name	Last commit message	Last commit date
Latest commit History 280 Commits
data		data
fits		fits
old_scripts		old_scripts
plots/GISAID_COGUK_GLOBAL_ANALYSIS		plots/GISAID_COGUK_GLOBAL_ANALYSIS
sandbox		sandbox
src		src
.gitattributes		.gitattributes
.gitignore		.gitignore
LineageExplorer.Rproj		LineageExplorer.Rproj
RQ_global analysis_VOCs_GISAID COGUK metadata.R		RQ_global analysis_VOCs_GISAID COGUK metadata.R
download_COGUK.R		download_COGUK.R
download_GISAID.R		download_GISAID.R
download_GISAID_json.R		download_GISAID_json.R
download_GISAID_records.R		download_GISAID_records.R
fastmultinomHess.R		fastmultinomHess.R
global analysis_VOCs_GISAID COGUK metadata.R		global analysis_VOCs_GISAID COGUK metadata.R

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Estimate growth rate advantage of SARS-CoV2 variants of concern using multinomial fits and GISAID and COG-UK data

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