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Make sure single-character codes in encode_geno() #16

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kbroman opened this issue Jun 20, 2019 · 1 comment
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Make sure single-character codes in encode_geno() #16

kbroman opened this issue Jun 20, 2019 · 1 comment
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@kbroman
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kbroman commented Jun 20, 2019

Make sure the allele codes in encode_geno() are single characters; otherwise you get weird results. If allele codes are like "AA", "CC", "GG", "TT", can just take the first letter. If there are some hets in there, treat as missing.
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kbroman commented Sep 25, 2019

I'll just have it give an error.

kbroman added a commit to kbroman/qtl2convert that referenced this issue Sep 25, 2019
@kbroman
encode_geno() now gives a warning if allele_codes have >1 character
34c43dd 
- Issue rqtl#16
@kbroman kbroman closed this as completed Sep 26, 2019
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