Releases: rpetit3/camlhmp
Releases · rpetit3/camlhmp
v1.1.0
v1.1.0 rpetit3/camlhmp "Wild Bactrian" 2024/08/25
Added
- allow
min-coverage
and min-coverage
params to be set in the yaml
- Priority:
- user provided command line arguments (
--min-pident
and --min-coverage
)
- schema provided values
- default values specified in the command script
v1.0.1
v1.0.1 rpetit3/camlhmp "Bactrian" 2024/08/25
Added
camlhmp-blast-thresholds
command to suggest specificity thresholds for BLAST results
print_versions
to print versions from multiple schemas
print_camlhmp_version
to print the camlhmp version
v1.0.0
v1.0.0 rpetit3/camlhmp "Dromedary" 2024/08/15
Added
- Added a mkdocs documentation site
Fixed
- fixed
camlhmp-blast-regions
unnecessary debug output
- fixed test schemas to match the new schema format
v0.3.1
v0.3.1 rpetit3/camlhmp "Maybe a cat?" 2024/08/05
Fixed
camlhmp-blast-alleles
not having a default value for targets
v0.3.0
v0.3.0 rpetit3/camlhmp "More bunnies and fewer baby birds" 2024/08/05
Added
camlhmp-blast-alleles
command to search alleles in a set of query sequences using BLAST algorithms
v0.2.2
v0.2.2 rpetit3/camlhmp "Even a few baby birds" 2024/07/22
Fixed
--version
flag now works as expected
v0.2.1
v0.2.1 rpetit3/camlhmp "And a bunch of birds" 2024/07/22
Added
- version output with schema name and version
Fixed
- Empty input files will no longer be processed
v0.2.0
v0.2.0 rpetit3/camlhmp "Four little bunnies" 2024/07/22
Added
camlhmp-blast-region
command to search full regions of interest using BLAST algorithms
- added
camlhmp_version
, schema_version
, and params
to output files
v0.1.0
v0.1.0 rpetit3/camlhmp "Little baby legs" 2024/04/30
Added
camhmp
command to list all available commands
camlhmp-blast
command to search for targets in a set of query sequences using BLAST algorithms
camlhmp-extract
command to extract targets from a set of reference sequences
excludes
field to types
section to allow for exclusion of targets from a profile
- replaced
profiles
section with types
section to better reflect the schema structure
- output of results for
camlhmp-blast
v0.0.1
v0.0.1 rpetit3/camlhmp "Not even walking yet" 2024/04/24
This is a development release for getting things on PyPi and Bioconda. Not expected to be stable.
Added
- basics of camlhmp with a working example using partial SCCmec