Skip CuPy v13.0.* due to broken ElementwiseKernel and other core kernels
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and other core CuPy kernels. Related Issues: - cupy/cupy#8184 - cupy/cupy#8155 - AdvancedPhotonSource/tike#302
Computing flow: 0%| | 0/9 [01:03<?, ?it/s]
Traceback (most recent call last):
File "/home/repositories/test-ultrack/track-with-flow.py.py", line 145, in <module>
main("/home/Datasets/EMBL.tif")
File "/home/repositories/test-ultrack/track-with-flow.py.py", line 48, in main
flow = timelapse_flow(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/ultrack/imgproc/flow.py", line 632, in timelapse_flow
flow_field(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/ultrack/imgproc/flow.py", line 205, in flow_field
scaled_source = _interpolate(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/ultrack/imgproc/flow.py", line 71, in _interpolate
blurred = ndi.gaussian_filter(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupyx/scipy/ndimage/_filters.py", line 373, in gaussian_filter
return _run_1d_correlates(input, list(zip(sigmas, orders)), get, output,
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupyx/scipy/ndimage/_filters.py", line 206, in _run_1d_correlates
return _filters_core._run_1d_filters(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupyx/scipy/ndimage/_filters_core.py", line 105, in _run_1d_filters
fltr(input, arg, axis, output, mode, cval, origin)
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupyx/scipy/ndimage/_filters.py", line 114, in correlate1d
return _correlate_or_convolve(input, weights, output, mode, cval, origins)
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupyx/scipy/ndimage/_filters.py", line 177, in _correlate_or_convolve
output = _filters_core._call_kernel(kernel, input, weights, output,
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupyx/scipy/ndimage/_filters_core.py", line 150, in _call_kernel
kernel(*args)
File "cupy/_core/_kernel.pyx", line 920, in cupy._core._kernel.ElementwiseKernel.__call__
File "cupy/_core/_kernel.pyx", line 945, in cupy._core._kernel.ElementwiseKernel._get_elementwise_kernel
File "cupy/_util.pyx", line 64, in cupy._util.memoize.decorator.ret
File "cupy/_core/_kernel.pyx", line 728, in cupy._core._kernel._get_elementwise_kernel
File "cupy/_core/_kernel.pyx", line 82, in cupy._core._kernel._get_simple_elementwise_kernel_from_code
File "cupy/_core/core.pyx", line 2254, in cupy._core.core.compile_with_cache
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupy/cuda/compiler.py", line 484, in _compile_module_with_cache
return _compile_with_cache_cuda(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupy/cuda/compiler.py", line 562, in _compile_with_cache_cuda
ptx, mapping = compile_using_nvrtc(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupy/cuda/compiler.py", line 319, in compile_using_nvrtc
return _compile(source, options, cu_path,
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupy/cuda/compiler.py", line 284, in _compile
options, headers, include_names = _jitify_prep(
File "/home/miniconda3/envs/ultrack-plant-seg-fixcupy/lib/python3.10/site-packages/cupy/cuda/compiler.py", line 233, in _jitify_prep
jitify._init_module()
File "cupy/cuda/jitify.pyx", line 212, in cupy.cuda.jitify._init_module
File "cupy/cuda/jitify.pyx", line 233, in cupy.cuda.jitify._init_module
File "cupy/cuda/jitify.pyx", line 209, in cupy.cuda.jitify._init_cupy_headers
File "cupy/cuda/jitify.pyx", line 192, in cupy.cuda.jitify._init_cupy_headers_from_scratch
File "cupy/cuda/jitify.pyx", line 264, in cupy.cuda.jitify.jitify
RuntimeError: Runtime compilation failed |
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Thank you @qin-yu! |
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Without
!=13.0.*,timelapse_flow()failed. It is promised to be fixed inv13.1.0so we avoid allv13.0.*. I tested tracking with flow on the flow field 3D env and believe other gpu env dependencies should also avoid this version.Related Issues: