update documentation as well

royerlab · Sep 20, 2024 · 91757fd · 91757fd
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diff --git a/README.md b/README.md
@@ -132,10 +132,10 @@ This project is licensed under the BSD-3 License - see the [LICENSE](LICENSE) fi
 
 ## Citing
 
-If you use ultrack in your research, please cite the following papers, [the algorithm](https://arxiv.org/pdf/2308.04526) and [the biological applications and software](https://www.biorxiv.org/content/10.1101/2024.09.02.610652).
+If you use `ultrack` in your research, please cite the following papers, [the algorithm](https://arxiv.org/pdf/2308.04526) and [the biological applications and software](https://www.biorxiv.org/content/10.1101/2024.09.02.610652).
 
 ```
-@misc{bragantini2023ucmtracking,
+@article{bragantini2023ucmtracking,
       title={Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps},
       author={Jordão Bragantini and Merlin Lange and Loïc Royer},
       year={2023},
@@ -154,7 +154,7 @@ If you use ultrack in your research, please cite the following papers, [the algo
 }
 ```
 
-Include citations for auxiliary methods (e.g., Cellpose, napari) depending on your usage.
+And the respective auxiliary methods (e.g. Cellpose, napari, etc) depending on your usage.
 
 ## Acknowledgements
 

diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -80,7 +80,7 @@ Zebrafish imaged using `DaXi <https://www.nature.com/articles/s41592-022-01417-2
 Citing
 ------
 
-If you use ``ultrack`` in your research, please cite the following paper:
+If you use ``ultrack`` in your research, please cite the following papers, [the algorithm](https://arxiv.org/pdf/2308.04526) and [the biological applications and software](https://www.biorxiv.org/content/10.1101/2024.09.02.610652).
 
 .. code-block:: bibtex
 
@@ -93,6 +93,15 @@ If you use ``ultrack`` in your research, please cite the following paper:
       primaryClass={cs.CV}
    }
 
+   @article{bragantini2024ultrack,
+      title={Ultrack: pushing the limits of cell tracking across biological scales},
+      author={Bragantini, Jordao and Theodoro, Ilan and Zhao, Xiang and Huijben, Teun APM and Hirata-Miyasaki, Eduardo and VijayKumar, Shruthi and Balasubramanian, Akilandeswari and Lao, Tiger and Agrawal, Richa and Xiao, Sheng and others},
+      journal={bioRxiv},
+      pages={2024--09},
+      year={2024},
+      publisher={Cold Spring Harbor Laboratory}
+   }
+
 And the respective auxiliary methods (e.g. Cellpose, napari, etc) depending on your usage.