What's new in 0.19.1

New Features

seismic wf now accepts --sep-strands. This change is possible because seismic relate now also accepts --sep-strands and, if that option is given, will auto-generate a FASTA file of both strands. Thus, you can also run seismic align and seismic relate separately, as long as you pass the same FASTA file and the same --sep-stands and --minus-label options to both commands.
seismic +splitbam is a new command that accepts one or more BAM (or CRAM) files and splits each file into one BAM file for each reference, just like the last phase of seismic align. It also accepts the --sep-strands option if you want to split each reference further into plus and minus strands. This feature is useful when you generate or obtain a BAM file outside of SEISMIC-RNA that contains multiple references, and you need to split it into one file for each reference so that you can pass those files into seismic relate or seismic wf.

seismic align with --sep-strands no longer generates a FASTA file of both strands because it is no longer necessary due to the first new feature (above).

Fixed bug where an empty directory called align-xxxxxxxx would appear in a sample's output directory if the align output directory did not yet exist.

Full Changelog: v0.19.0...v0.19.1