Draw Venn diagram of dependencies

rouskinlab · Aug 29, 2024 · 77a8537 · 77a8537
1 parent 330ad0f
commit 77a8537
Show file tree

Hide file tree

Showing 6 changed files with 274 additions and 3 deletions.
diff --git a/.github/workflows/build-deploy-docs.yml b/.github/workflows/build-deploy-docs.yml
@@ -7,6 +7,7 @@ on:
       - main
     paths:
       - src/userdocs/**
+      - .github/workflows/build-deploy-docs.yml
 
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:

diff --git a/.github/workflows/install-test.yml b/.github/workflows/install-test.yml
@@ -8,7 +8,6 @@ on:
     paths:
       - src/seismicrna/**
       - pyproject.toml
-      - conda/meta.yaml
       - environment.yml
       - .github/workflows/install-test.yml
 

diff --git a/src/userdocs/index.rst b/src/userdocs/index.rst
@@ -2,11 +2,15 @@
 SEISMIC-RNA
 ########################################################################
 
+Structure Ensemble Inference by Sequencing, Mutation Identification, and
+Clustering of RNA
+
+
 .. toctree::
     :maxdepth: 1
 
     about/index
-    install
+    install/index
     tutorials/index
     manual/index
     cli

diff --git a/src/userdocs/install/dependencies.png b/src/userdocs/install/dependencies.png
diff --git a/src/userdocs/install/dependencies.svg b/src/userdocs/install/dependencies.svg
diff --git a/src/userdocs/install.rst → src/userdocs/install/index.rst b/src/userdocs/install.rst → src/userdocs/install/index.rst
@@ -186,7 +186,10 @@ After updating, it is a good idea to run the tests (see :ref:`test_seismicrna`).
 Appendix 1: Install the dependencies of SEISMIC-RNA
 ================================================================================
 
-SEISMIC-RNA has four dependencies software that are not available from pip.
+Although most dependencies of SEISMIC-RNA are available from pip, four are not:
+
+.. image:: dependencies.png
+
 The easiest way to install them is with Conda, using the following commands:
 
 ============= =========================================================