Remove two redundant test_min_mapq unit tests #136
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name: Install SEISMIC-RNA and run its test suite | |
on: | |
# Runs on pushes targeting the main branch | |
push: | |
branches: | |
- main | |
paths: | |
- src/seismicrna/** | |
- pyproject.toml | |
- environment.yml | |
- .github/workflows/install-test.yml | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. | |
# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. | |
concurrency: | |
group: pages | |
cancel-in-progress: false | |
jobs: | |
install-test: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
# Ensure the workflow runs with bash (on GitHub Actions, Conda only works with bash) | |
shell: bash -el {0} | |
steps: | |
- name: Checkout this GitHub repository | |
uses: actions/checkout@v4 | |
- name: Set up Miniconda | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
activate-environment: seismic | |
environment-file: environment.yml | |
condarc-file: condarc.yml | |
python-version: 3.12 | |
- name: Install SEISMIC-RNA from source | |
run: | | |
pip install . | |
- name: Run the test suite | |
run: | | |
echo "Running tests for $(seismic --version)" | |
bash test.sh |