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Roth Laboratory

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  1. chromozoom chromozoom Public

    ChromoZoom is a fast, fluid web-based genome browser

    JavaScript 46 5

  2. pacybara pacybara Public

    A pacbio barcode clustering and barseq pipeline

    R 5

  3. tileseqMave tileseqMave Public

    The RothLab TileSeq analysis pipeline for MAVE

    R 4 6

  4. mave-gene-prioritization mave-gene-prioritization Public

    R script to 1) Extract missense variants that had been observed in "clinical testing" (as opposed to "literature only") in ClinVar. 2) Calculating movability and reappearance parameters using the a…

    R 4

  5. clusterUtil clusterUtil Public

    utility scripts for HPC cluster usage

    Shell 2

  6. pph2_and_rank pph2_and_rank Public

    Forked from powerpak/pph2_and_rank

    Ranks genes according to PolyPhen2 scores for a list of mutations

    Python 1

Repositories

Showing 10 of 15 repositories
  • tileseq_mutcount Public Forked from RyogaLi/tileseq_mutcount

    Re-implement TileSeq mutation counts in python

    rothlab/tileseq_mutcount’s past year of commit activity
    Python 0 MIT 3 1 0 Updated Sep 9, 2024
  • tileseqMave Public

    The RothLab TileSeq analysis pipeline for MAVE

    rothlab/tileseqMave’s past year of commit activity
    R 4 GPL-3.0 6 14 0 Updated Apr 1, 2024
  • pacybara Public

    A pacbio barcode clustering and barseq pipeline

    rothlab/pacybara’s past year of commit activity
    R 5 GPL-3.0 0 0 0 Updated Mar 27, 2024
  • clusterUtil Public

    utility scripts for HPC cluster usage

    rothlab/clusterUtil’s past year of commit activity
    Shell 2 0 0 0 Updated Mar 1, 2024
  • pacbioTools Public
    rothlab/pacbioTools’s past year of commit activity
    Shell 0 0 0 0 Updated Jul 10, 2023
  • docs Public
    rothlab/docs’s past year of commit activity
    0 0 0 0 Updated Jun 5, 2023
  • proteomeLLR Public

    LLR calculation for various variant effect predictors, proteome-wide

    rothlab/proteomeLLR’s past year of commit activity
    Python 0 0 0 0 Updated May 1, 2023
  • mavequest-front-end Public

    The frontend service of MaveQuest, a web resource to explore potential assays, phenotypes and clinical interests for human gene variants.

    rothlab/mavequest-front-end’s past year of commit activity
    Vue 1 0 0 0 Updated Apr 28, 2023
  • maveregistry-front-end Public

    MaveRegistry is a collaborative resource to catalyze collaboration, reduce redundant efforts, allow stakeholders to nominate targets, and enable tracking and sharing of progress on ongoing MAVE projects.

    rothlab/maveregistry-front-end’s past year of commit activity
    Vue 0 0 0 0 Updated Dec 22, 2022
  • variant-effect-predictor-assessment Public
    rothlab/variant-effect-predictor-assessment’s past year of commit activity
    R 1 1 0 0 Updated Sep 15, 2022
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