undefined symbol error

[RinuKulkarni]

miniconda4/envs/hetbuilder/lib/python3.9/site-packages/hetbuilder/hetbuilder_backend.cpython-39-x86_64-linux-gnu.so: undefined symbol: spgat_standardize_cell

[romankempt]

The undefined symbol error is a runtime linking error which I can't reproduce. Other people have similar issues with pybind11 (https://github.com/pybind/pybind11/issues), e.g., pybind/pybind11#3623.

Unfortunately, I currently have no idea how to solve it...

[RinuKulkarni]

Hi, May I know the architecture of your machine. I tried everything. Hetbuilder is installed successfully but when I do hetbuilder --help I get the error. Regards, Ramya Quoting Roman Kempt ***@***.***>:

…

The undefined symbol error is a runtime linking error which I can't reproduce. Other people have similar issues with pybind11 (https://github.com/pybind/pybind11/issues), e.g., pybind/pybind11#3623. Unfortunately, I currently have no idea how to solve it... -- Reply to this email directly or view it on GitHub: #3 (comment) You are receiving this because you authored the thread. Message ID: ***@***.***>

[romankempt]

Lenovo thinkpad T14 with intel cpus. I'm running everything in WSL. Here is a list of my installed conda modules where the installation works without any issues.

hetbuilder_list.txt

I do not know what causes this error. It seems to be a very subtle problem (perhaps something with RPATH). I'm checking out docker, but till I understand how that works it might take some time.

[romankempt]

should now be resolved