debug mirror-template_repos gh action #23
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| name: mirror-template-repos | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| mirror-template-repos: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: main | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Set up pandoc | |
| uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Install pandoc-citeproc | |
| run: | | |
| sudo apt-get install -y pandoc pandoc-citeproc | |
| - name: Set up tinytex | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Quarto version | |
| run: | | |
| quarto --version | |
| - name: Remove renv | |
| # first remove renv, then install system requirements based on packages listed in DESCRIPTION | |
| run: | | |
| rm renv.lock | |
| rm -r renv | |
| rm .Rprofile | |
| - name: Install R package dependencies (cached) | |
| # see https://github.com/r-lib/actions/tree/v2/setup-r-dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: local::. | |
| - name: Create template repos in separate directories | |
| run: | | |
| R -e 'devtools::install_local(".")' | |
| ls ~ | |
| R -e 'library(ourproj); ourproj_start(directory = "~/workflowr_targets", project_title = "My Project", git_username = "rmgpanw", github_gitlab = "github", template = "workflowr_targets")' | |
| ls ~ | |
| R -e 'library(ourproj); ourproj_start(directory = "~/quarto_website_targets", project_title = "My Project", git_username = "rmgpanw", github_gitlab = "github", template = "quarto_website_targets")' | |
| - name: Create new orphan branch populated with template repo | |
| run: | | |
| git config --global user.name "GitHub Actions" | |
| git config --global user.email "[email protected]" | |
| git checkout --orphan workflowr_targets | |
| git reset | |
| cp -r .git ~/workflowr_targets | |
| rm -rf .[^.]* * | |
| cp -r ~/workflowr_targets/. . | |
| R -e 'fs::file_copy(path = list.files(fs::path_package("rmarkdown/templates/workflowr_analysis/skeleton", package = "ourproj"), full.names = TRUE), new_path = "analysis/my_analysis.Rmd")' | |
| git add . | |
| git commit -m "Initial commit" | |
| R -e 'targets::tar_make()' | |
| R -e 'targets::tar_meta(fields = error, complete_only = TRUE)' | |
| git add . | |
| git commit -m "Run targets pipeline" | |
| git push --force origin workflowr_targets | |
| - name: Create new orphan branch populated with quarto_website_targets template repo | |
| run: | | |
| git config --global user.name "GitHub Actions" | |
| git config --global user.email "[email protected]" | |
| git checkout --orphan quarto_website_targets | |
| git reset | |
| cp -r .git ~/quarto_website_targets | |
| rm -rf .[^.]* * | |
| cp -r ~/quarto_website_targets/. . | |
| git add . | |
| git commit -m "Initial commit" | |
| R -e 'targets::tar_make()' | |
| R -e 'targets::tar_meta(fields = error, complete_only = TRUE)' | |
| git add . | |
| git commit -m "Run targets pipeline" | |
| git push --force origin quarto_website_targets | |
| - name: git-sync workflowr_targets | |
| uses: morganschoen/git-sync@main | |
| with: | |
| source_repo: "rmgpanw/ourproj" | |
| source_branch: "workflowr_targets" | |
| destination_repo: "rmgpanw/workflowr_targets" | |
| destination_branch: "main" | |
| ssh_private_key: ${{ secrets.SSH_PRIVATE_KEY }} # optional | |
| # source_ssh_private_key: ${{ secrets.SOURCE_SSH_PRIVATE_KEY }} # optional, will override `SSH_PRIVATE_KEY` | |
| # destination_ssh_private_key: ${{ secrets.DESTINATION_SSH_PRIVATE_KEY }} # optional, will override `SSH_PRIVATE_KEY` | |
| - name: git-sync quarto_website_targets | |
| uses: morganschoen/git-sync@main | |
| with: | |
| source_repo: "rmgpanw/ourproj" | |
| source_branch: "quarto_website_targets" | |
| destination_repo: "rmgpanw/quarto_website_targets" | |
| destination_branch: "main" | |
| ssh_private_key: ${{ secrets.SSH_PRIVATE_KEY }} # optional | |
| # source_ssh_private_key: ${{ secrets.SOURCE_SSH_PRIVATE_KEY }} # optional, will override `SSH_PRIVATE_KEY` | |
| # destination_ssh_private_key: ${{ secrets.DESTINATION_SSH_PRIVATE_KEY }} # optional, will override `SSH_PRIVATE_KEY` |