Bump psf/black from 23.10.1 to 24.4.2 (#125)

* Bump psf/black from 23.10.1 to 24.4.2 Bumps [psf/black](https://github.com/psf/black) from 23.10.1 to 24.4.2. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](psf/black@23.10.1...24.4.2) --- updated-dependencies: - dependency-name: psf/black dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Bump psf/black from 23.10.1 to 24.4.2 Bumps [psf/black](https://github.com/psf/black) from 23.10.1 to 24.4.2. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](psf/black@23.10.1...24.4.2) --- updated-dependencies: - dependency-name: psf/black dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Update black.yml * Update source formatting using black 24.4.2 * Update source formatting using black 24.4.2 --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Huska, Matthew <[email protected]>
rki-mf1 · Jul 2, 2024 · 1809a64 · 1809a64
1 parent 58c22ea
commit 1809a64
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Showing 4 changed files with 14 additions and 14 deletions.
diff --git a/.github/workflows/black.yml b/.github/workflows/black.yml
@@ -7,4 +7,4 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: psf/black@23.10.1
+      - uses: psf/black@24.4.2
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -19,6 +19,6 @@ repos:
         - --black-line-length=79
 
 -   repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 23.10.1
+    rev: 24.4.2
     hooks:
     -   id: black
diff --git a/lib/sonartoVCF_v2.bak.py b/lib/sonartoVCF_v2.bak.py
@@ -163,9 +163,9 @@ def create_vcf(rows_grouped, tmp_dirname, refdescr):
                                 splited_final_id_list, start=1
                             ):
                                 if splited_final_id == id:  # find the exist one
-                                    final_df.at[
-                                        index_start_postion, group_name
-                                    ] = new_GT
+                                    final_df.at[index_start_postion, group_name] = (
+                                        new_GT
+                                    )
                                     break
                                 elif (
                                     totel_len == new_GT

diff --git a/lib/sonartoVCF_v2.py b/lib/sonartoVCF_v2.py
@@ -154,9 +154,9 @@ def create_vcf(rows_grouped, tmp_dirname, refdescr):
         index=np.arange(1, 29904),
     )
     final_snp_df["POS"] = np.arange(1, 29904)
-    final_snp_df[
-        "#CHROM"
-    ] = refdescr  # duplicated line here did a trick for assigning the value
+    final_snp_df["#CHROM"] = (
+        refdescr  # duplicated line here did a trick for assigning the value
+    )
     final_snp_df["ID"] = "."
     final_snp_df["REF"] = "."
     final_snp_df["ALT"] = "."
@@ -294,9 +294,9 @@ def create_vcf(rows_grouped, tmp_dirname, refdescr):
                                     # print('index',index_postion,'test', splited_ID, _E_new_GT)
                                     if splited_ID == _id:  # Found the exist one
                                         # print('Found the exist one', splited_final_id)
-                                        final_indel_df.at[
-                                            index_postion, group_name
-                                        ] = str(_E_new_GT)
+                                        final_indel_df.at[index_postion, group_name] = (
+                                            str(_E_new_GT)
+                                        )
                                         break
                                     elif (
                                         totel_len == _E_new_GT
@@ -307,9 +307,9 @@ def create_vcf(rows_grouped, tmp_dirname, refdescr):
                                             + _id
                                         )
                                         # with new GT number
-                                        final_indel_df.at[
-                                            index_postion, group_name
-                                        ] = str(_E_new_GT + 1)
+                                        final_indel_df.at[index_postion, group_name] = (
+                                            str(_E_new_GT + 1)
+                                        )
                                         # appends new alt
                                         final_indel_df.at[index_postion, "ALT"] = (
                                             final_indel_df.at[index_postion, "ALT"]