Initial release

Clean your data (fasta files, Illumina reads or Nanopore (ONT) reads) against spike-in or custom sequences.

Supported species:

• Homo sapiens
• Mus musculus
• Chlorocebus sabeus
• Gallus gallus
• Columba livia
• Escherichia coli
• custom genome(s)

Supported control sequences:

• ONT DNA-Seq spike (standard amplicon mapping the 3' end of the Lambda genome)
• ONT RNA-Seq spike (yeast ENO2 Enolase II of strain S288C)
• Illumina spike (enterobacteria phage phix174)
• rRNA database (from https://github.com/biocore/sortmerna/tree/master/data/rRNA_databases)
• custom sequence(s)

Align with:

• minimap2
• bbduk