Summary file for number and proportion of mapped and unmapped reads #106
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…connection" from the default pipeline
|
Hey @ayoraind, thanks for the PR; that's highly appreciated! We haven't had the time yet, but we will go through the changes as soon as possible to merge it in. |
|
@hoelzer, This is fine. Many thanks for your excellent pipeline. |
|
Hey, thanks again @ayoraind ! The code looks good and I did some tests. However, I think there is a problem when Missing workflow output parameter: sort_bam_ch
-- Check script 'clean.nf' at line: 198 or see '.nextflow.log' file for more detailsI will check that after merging and do another branch to fix that. thanks again! |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
As per the issue #105