Merge pull request #34 from hoelzer/nf_version

nf version check failed for new v21
rki-mf1 · May 17, 2021 · d1eff47 · d1eff47
2 parents bbcdc55 + 3c5c681
commit d1eff47
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Showing 4 changed files with 4 additions and 8 deletions.
diff --git a/clean.nf b/clean.nf
@@ -1,10 +1,5 @@
 #!/usr/bin/env nextflow
 
-if( !nextflow.version.matches('20.01+') ) {
-    println "This workflow requires Nextflow version 20.01 or greater -- You are running version $nextflow.version"
-    exit 1
-}
-
 nextflow.enable.dsl=2
 
 /*

diff --git a/configs/container.config b/configs/container.config
@@ -1,6 +1,6 @@
 process {
     withLabel: basics {     container = 'nanozoo/basics:1.0--9992be5' } 
-    withLabel: minimap2 {   container = 'nanozoo/minimap2:2.17--7066fef' }
+    withLabel: minimap2 {   container = 'nanozoo/minimap2:2.18--618fb68' }
     withLabel: bbmap {      container = 'nanozoo/bbmap:38.79--8e915d7' } 
     withLabel: multiqc {    container = 'nanozoo/multiqc:1.9--aba729b' }
     withLabel: fastqc {     container = 'nanozoo/fastqc:0.11.9--f61b8b4' }

diff --git a/envs/minimap2.yaml b/envs/minimap2.yaml
@@ -3,6 +3,6 @@ channels:
   - bioconda
   - conda-forge
 dependencies:
-  - minimap2=2.17
-  - samtools=1.9
+  - minimap2=2.18
+  - samtools=1.11
   - pigz=2.3.4
diff --git a/nextflow.config b/nextflow.config
@@ -1,5 +1,6 @@
 manifest {
     mainScript = 'clean.nf'
+    nextflowVersion = '>=21.04.0'
 }
 
 // default parameters