Merge pull request #101 from rki-mf1/increase-RAM

Increase ram
rki-mf1 · Nov 8, 2024 · 1b952d8 · 1b952d8
2 parents 9114a4e + 078d492
commit 1b952d8
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/configs/node.config b/configs/node.config
@@ -1,12 +1,12 @@
 process {
-    withLabel: minimap2  {   cpus = 24;  memory = 24.GB }
-    withLabel: bwa       {   cpus = {24 * task.attempt}; memory = {24.GB * task.attempt } ; maxRetries = 3 ; errorStrategy = { task.exitStatus in 130..140 ? 'retry' : 'terminate' } }
-    withLabel: bbmap     {      cpus = 24;  memory = 24.GB }
-    withLabel: smallTask {  cpus = 1;   memory = 2.GB }
-    withLabel: pysam     {      cpus = 2;   memory = 4.GB }
-    withLabel: fastqc    { cpus = {2 * task.attempt}; memory = {4.GB * task.attempt } ; maxRetries = 3 ; errorStrategy = { task.exitStatus in 130..140 ? 'retry' : 'terminate' } }
-    withLabel: multiqc   {    cpus = 4;   memory = 4.GB }
-    withLabel: nanoplot  {    cpus = 8;   memory = 8.GB }
-    withLabel: quast     {       cpus = 8;   memory = 8.GB }
+    withLabel: minimap2     { cpus = 24;  memory = {24.GB * task.attempt}; maxRetries = 4 ; errorStrategy = { task.exitStatus in 1 || 130..140 ? 'retry' : 'terminate' }; }
+    withLabel: bwa          { cpus = 24;  memory = {24.GB * task.attempt}; maxRetries = 3 ; errorStrategy = { task.exitStatus in 130..140 ? 'retry' : 'terminate' } }
+    withLabel: bbmap        { cpus = 24;  memory = {24.GB * task.attempt}; maxRetries = 6 ; errorStrategy = { task.exitStatus in 1 || 130..140 ? 'retry' : 'terminate' }; }
+    withLabel: smallTask    { cpus = 1;   memory = 2.GB }
+    withLabel: pysam        { cpus = 2;   memory = 4.GB }
+    withLabel: fastqc       { cpus = 2;   memory = {4.GB * task.attempt } ; maxRetries = 3 ; errorStrategy = { task.exitStatus in 130..140 ? 'retry' : 'terminate' }; }
+    withLabel: multiqc      { cpus = 4;   memory = 4.GB }
+    withLabel: nanoplot     { cpus = 8;   memory = 8.GB }
+    withLabel: quast        { cpus = 8;   memory = 8.GB }
 }