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Client crashed when transferring 'bigger' files, but they appear correctly on the iRODS side #71

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jnimoth opened this issue Feb 15, 2023 · 2 comments
Open

Client crashed when transferring 'bigger' files, but they appear correctly on the iRODS side #71

jnimoth opened this issue Feb 15, 2023 · 2 comments
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@jnimoth
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jnimoth commented Feb 15, 2023

Using the current develop branch (commit f022d06), I saw some issues when trying to transfer larger files. While file transfers for smaller files worked fine, I saw issues when trying upload a 17GB and a 100GB tar archive.

First some general info:

Python version used: Python 3.10.6
All other required Python packages are in the version specified in the requirements.txt

The issue in more detail:

  1. Trying to upload a 100GB tar archive via the Data Transfers tab

After a longer time, the client crashes and the following message is displayed:

['/home/jelte/peregrine_mount/100GB.tar'] 100000010240
100000010240 0
[2023-02-15 13:28:15,016] {IrodsConnector.py:967} INFO - iRODS UPLOAD: /home/jelte/peregrine_mount/100GB.tar-->/testrug/home/[email protected]/iBridges_2023_tests rootResc
[2023-02-15 13:28:15,024] {IrodsConnector.py:1002} INFO - IRODS UPLOADING file /home/jelte/peregrine_mount/100GB.tar to /testrug/home/[email protected]/iBridges_2023_tests/100GB.tar
[2023-02-15 13:28:17,327] {parallel.py:365} INFO - num_threads = 3 ; bytes_per_thread = 33333336746
[2023-02-15 14:36:33,907] {connection.py:121} CRITICAL - The read operation timed out
[2023-02-15 14:36:33,923] {connection.py:122} ERROR - Could not receive server response
[2023-02-15 14:36:33,924] {IrodsConnector.py:1029} INFO - UPLOAD ERROR
Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 180, in _recv_message_in_len
    buf = sock.recv(size_left, socket.MSG_WAITALL)
  File "/usr/lib/python3.10/ssl.py", line 1256, in recv
    raise ValueError(
ValueError: non-zero flags not allowed in calls to recv() on <class 'ssl.SSLSocket'>

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 113, in recv
    msg = iRODSMessage.recv(self.socket)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 270, in recv
    rsp_header_size = _recv_message_in_len(sock, 4)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 182, in _recv_message_in_len
    buf = sock.recv(size_left)
  File "/usr/lib/python3.10/ssl.py", line 1259, in recv
    return self.read(buflen)
  File "/usr/lib/python3.10/ssl.py", line 1132, in read
    return self._sslobj.read(len)
TimeoutError: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 1004, in upload_data
    self.irods_put(src_path, cmp_path, resc_name)
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 851, in irods_put
    self.session.data_objects.put(local_path, irods_path, **options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 151, in put
    if not self.parallel_put( local_path, (obj,o), total_bytes = sizelist[0], num_threads = num_threads,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 244, in parallel_put
    return parallel.io_main( self.sess, data_or_path_, parallel.Oper.PUT | (parallel.Oper.NONBLOCKING if async_ else 0), file_,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 482, in io_main
    retval = _io_multipart_threaded (Operation, (Data, Io), replica_token, resc_hier, session, fname, total_bytes,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in _io_multipart_threaded
    bytecounts = [ f.result() for f in futures ]
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in <listcomp>
    bytecounts = [ f.result() for f in futures ]
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 458, in result
    return self.__get_result()
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 403, in __get_result
['/home/jelte/peregrine_mount/100GB.tar'] 100000010240
100000010240 0
[2023-02-15 13:28:15,016] {IrodsConnector.py:967} INFO - iRODS UPLOAD: /home/jelte/peregrine_mount/100GB.tar-->/testrug/home/[email protected]/iBridges_2023_tests rootResc
[2023-02-15 13:28:15,024] {IrodsConnector.py:1002} INFO - IRODS UPLOADING file /home/jelte/peregrine_mount/100GB.tar to /testrug/home/[email protected]/iBridges_2023_tests/100GB.tar
[2023-02-15 13:28:17,327] {parallel.py:365} INFO - num_threads = 3 ; bytes_per_thread = 33333336746
[2023-02-15 14:36:33,907] {connection.py:121} CRITICAL - The read operation timed out
[2023-02-15 14:36:33,923] {connection.py:122} ERROR - Could not receive server response
[2023-02-15 14:36:33,924] {IrodsConnector.py:1029} INFO - UPLOAD ERROR
Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 180, in _recv_message_in_len
    buf = sock.recv(size_left, socket.MSG_WAITALL)
  File "/usr/lib/python3.10/ssl.py", line 1256, in recv
    raise ValueError(
ValueError: non-zero flags not allowed in calls to recv() on <class 'ssl.SSLSocket'>

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 113, in recv
    msg = iRODSMessage.recv(self.socket)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 270, in recv
    rsp_header_size = _recv_message_in_len(sock, 4)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 182, in _recv_message_in_len
    buf = sock.recv(size_left)
  File "/usr/lib/python3.10/ssl.py", line 1259, in recv
    return self.read(buflen)
  File "/usr/lib/python3.10/ssl.py", line 1132, in read
    return self._sslobj.read(len)
TimeoutError: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 1004, in upload_data
    self.irods_put(src_path, cmp_path, resc_name)
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 851, in irods_put
    self.session.data_objects.put(local_path, irods_path, **options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 151, in put
    if not self.parallel_put( local_path, (obj,o), total_bytes = sizelist[0], num_threads = num_threads,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 244, in parallel_put
    return parallel.io_main( self.sess, data_or_path_, parallel.Oper.PUT | (parallel.Oper.NONBLOCKING if async_ else 0), file_,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 482, in io_main
    retval = _io_multipart_threaded (Operation, (Data, Io), replica_token, resc_hier, session, fname, total_bytes,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in _io_multipart_threaded
    bytecounts = [ f.result() for f in futures ]
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in <listcomp>
    bytecounts = [ f.result() for f in futures ]
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 458, in result
    return self.__get_result()
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 403, in __get_result
    raise self._exception
  File "/usr/lib/python3.10/concurrent/futures/thread.py", line 58, in run
    result = self.fn(*self.args, **self.kwargs)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 340, in _io_part
    return ( _copy_part (file_, objHandle, length, queueObject, thread_debug_id, mgr_) if Operation.isPut()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 272, in _copy_part
    mgr.remove_io( obj_ ) # 1. closes obj if it is not the mgr's initial descriptor
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 320, in remove_io
    if is_initial: self.finalize()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 323, in finalize
    self.initial_io.close()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/data_object.py", line 177, in close
    self.conn.close_file(self.desc, **self.options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 616, in close_file
    self.recv()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 124, in recv
    raise NetworkException("Could not receive server response")
irods.exception.NetworkException: Could not receive server response
[2023-02-15 14:36:33,931] {dataTransfer.py:335} INFO - NetworkException('Could not receive server response')
Could not receive server response
Thread stopped


    raise self._exception
  File "/usr/lib/python3.10/concurrent/futures/thread.py", line 58, in run
    result = self.fn(*self.args, **self.kwargs)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 340, in _io_part
    return ( _copy_part (file_, objHandle, length, queueObject, thread_debug_id, mgr_) if Operation.isPut()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 272, in _copy_part
    mgr.remove_io( obj_ ) # 1. closes obj if it is not the mgr's initial descriptor
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 320, in remove_io
    if is_initial: self.finalize()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 323, in finalize
    self.initial_io.close()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/data_object.py", line 177, in close
    self.conn.close_file(self.desc, **self.options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 616, in close_file
    self.recv()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 124, in recv
    raise NetworkException("Could not receive server response")
irods.exception.NetworkException: Could not receive server response
[2023-02-15 14:36:33,931] {dataTransfer.py:335} INFO - NetworkException('Could not receive server response')
Could not receive server response
Thread stopped

The file does appear on iRODS without any recognizable error when using icommands:

j.p.nimoth@r      0 rootResc;rootRandy;ptC;replC;randy20;pt200;mnt_irodst200 100000010240 2023-02-15.14:44 & 100GB.tar
    sha2:Uk6pZDw+1WqBpTkdP8mIPImgHwjS+HEPzdlTtK2RoN8=    generic    /mnt/irodst200/home/[email protected]/iBridges_2023_tests/100GB.tar
  j.p.nimoth@r      1 rootResc;rootRandy;ptC;replC;randy11;pt101;mnt_irodst101 100000010240 2023-02-15.15:05 & 100GB.tar
    sha2:Uk6pZDw+1WqBpTkdP8mIPImgHwjS+HEPzdlTtK2RoN8=    generic    /mnt/irodst101/home/[email protected]/iBridges_2023_tests/100GB.tar

The checksum also is equivalent to the one calculated for the file on the source.

  1. Trying the same for a smaller, 17 GB archive, results in:
['/home/jelte/Downloads/17GB.tar'] 17000007680
17000007680 0
[2023-02-15 15:03:57,544] {IrodsConnector.py:967} INFO - iRODS UPLOAD: /home/jelte/Downloads/17GB.tar-->/testrug/home/[email protected]/iBridges_2023_tests rootResc
[2023-02-15 15:03:57,550] {IrodsConnector.py:1002} INFO - IRODS UPLOADING file /home/jelte/Downloads/17GB.tar to /testrug/home/[email protected]/iBridges_2023_tests/17GB.tar
[2023-02-15 15:03:58,211] {parallel.py:365} INFO - num_threads = 3 ; bytes_per_thread = 5666669226
[2023-02-15 15:09:23,394] {connection.py:121} CRITICAL - The read operation timed out
[2023-02-15 15:09:23,400] {connection.py:122} ERROR - Could not receive server response
[2023-02-15 15:09:23,400] {IrodsConnector.py:1029} INFO - UPLOAD ERROR
Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 180, in _recv_message_in_len
    buf = sock.recv(size_left, socket.MSG_WAITALL)
  File "/usr/lib/python3.10/ssl.py", line 1256, in recv
    raise ValueError(
ValueError: non-zero flags not allowed in calls to recv() on <class 'ssl.SSLSocket'>

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 113, in recv
    msg = iRODSMessage.recv(self.socket)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 270, in recv
    rsp_header_size = _recv_message_in_len(sock, 4)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 182, in _recv_message_in_len
    buf = sock.recv(size_left)
  File "/usr/lib/python3.10/ssl.py", line 1259, in recv
    return self.read(buflen)
  File "/usr/lib/python3.10/ssl.py", line 1132, in read
    return self._sslobj.read(len)
TimeoutError: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 1004, in upload_data
    self.irods_put(src_path, cmp_path, resc_name)
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 851, in irods_put
    self.session.data_objects.put(local_path, irods_path, **options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 151, in put
    if not self.parallel_put( local_path, (obj,o), total_bytes = sizelist[0], num_threads = num_threads,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 244, in parallel_put
    return parallel.io_main( self.sess, data_or_path_, parallel.Oper.PUT | (parallel.Oper.NONBLOCKING if async_ else 0), file_,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 482, in io_main
    retval = _io_multipart_threaded (Operation, (Data, Io), replica_token, resc_hier, session, fname, total_bytes,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in _io_multipart_threaded
    bytecounts = [ f.result() for f in futures ]
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in <listcomp>
    bytecounts = [ f.result() for f in futures ]
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 458, in result
    return self.__get_result()
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 403, in __get_result
    raise self._exception
  File "/usr/lib/python3.10/concurrent/futures/thread.py", line 58, in run
    result = self.fn(*self.args, **self.kwargs)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 340, in _io_part
    return ( _copy_part (file_, objHandle, length, queueObject, thread_debug_id, mgr_) if Operation.isPut()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 272, in _copy_part
    mgr.remove_io( obj_ ) # 1. closes obj if it is not the mgr's initial descriptor
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 320, in remove_io
    if is_initial: self.finalize()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 323, in finalize
    self.initial_io.close()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/data_object.py", line 177, in close
    self.conn.close_file(self.desc, **self.options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 616, in close_file
    self.recv()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 124, in recv
    raise NetworkException("Could not receive server response")
irods.exception.NetworkException: Could not receive server response
[2023-02-15 15:09:23,411] {dataTransfer.py:335} INFO - NetworkException('Could not receive server response')
Could not receive server response
Thread stopped

Again, the file seems to arrive successfully on iRODS, and the checksums between destination and source are identical.

  1. I also tried to use the Upload function in the normal file browser tab for comparison, bust just for the 17GB archive. The client first seems to freeze during the transfer, but then displays the following message:
[2023-02-15 15:25:34,119] {IrodsConnector.py:967} INFO - iRODS UPLOAD: /home/jelte/Downloads/17GB.tar-->/testrug/home/[email protected] 
[2023-02-15 15:25:34,135] {IrodsConnector.py:1002} INFO - IRODS UPLOADING file /home/jelte/Downloads/17GB.tar to /testrug/home/[email protected]/17GB.tar
[2023-02-15 15:25:35,461] {parallel.py:365} INFO - num_threads = 3 ; bytes_per_thread = 5666669226
[2023-02-15 15:30:07,093] {connection.py:121} CRITICAL - The read operation timed out
[2023-02-15 15:30:07,099] {connection.py:122} ERROR - Could not receive server response
[2023-02-15 15:30:07,099] {IrodsConnector.py:1029} INFO - UPLOAD ERROR
Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 180, in _recv_message_in_len
    buf = sock.recv(size_left, socket.MSG_WAITALL)
  File "/usr/lib/python3.10/ssl.py", line 1256, in recv
    raise ValueError(
ValueError: non-zero flags not allowed in calls to recv() on <class 'ssl.SSLSocket'>

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 113, in recv
    msg = iRODSMessage.recv(self.socket)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 270, in recv
    rsp_header_size = _recv_message_in_len(sock, 4)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/message/__init__.py", line 182, in _recv_message_in_len
    buf = sock.recv(size_left)
  File "/usr/lib/python3.10/ssl.py", line 1259, in recv
    return self.read(buflen)
  File "/usr/lib/python3.10/ssl.py", line 1132, in read
    return self._sslobj.read(len)
TimeoutError: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 1004, in upload_data
    self.irods_put(src_path, cmp_path, resc_name)
  File "/home/jelte/git_projects/iBridges/utils/IrodsConnector.py", line 851, in irods_put
    self.session.data_objects.put(local_path, irods_path, **options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 151, in put
    if not self.parallel_put( local_path, (obj,o), total_bytes = sizelist[0], num_threads = num_threads,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/manager/data_object_manager.py", line 244, in parallel_put
    return parallel.io_main( self.sess, data_or_path_, parallel.Oper.PUT | (parallel.Oper.NONBLOCKING if async_ else 0), file_,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 482, in io_main
    retval = _io_multipart_threaded (Operation, (Data, Io), replica_token, resc_hier, session, fname, total_bytes,
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in _io_multipart_threaded
    bytecounts = [ f.result() for f in futures ]
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 400, in <listcomp>
    bytecounts = [ f.result() for f in futures ]
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 458, in result
    return self.__get_result()
  File "/usr/lib/python3.10/concurrent/futures/_base.py", line 403, in __get_result
    raise self._exception
  File "/usr/lib/python3.10/concurrent/futures/thread.py", line 58, in run
    result = self.fn(*self.args, **self.kwargs)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 340, in _io_part
    return ( _copy_part (file_, objHandle, length, queueObject, thread_debug_id, mgr_) if Operation.isPut()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 272, in _copy_part
    mgr.remove_io( obj_ ) # 1. closes obj if it is not themgr's initial descriptor
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 320, in remove_io
    if is_initial: self.finalize()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/parallel.py", line 323, in finalize
    self.initial_io.close()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/data_object.py", line 177, in close
    self.conn.close_file(self.desc, **self.options)
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 616, in close_file
    self.recv()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 124, in recv
    raise NetworkException("Could not receive server response")
irods.exception.NetworkException: Could not receive server response
Exception ignored in: <function Connection.__del__ at 0x7f06d3254280>
Traceback (most recent call last):
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 89, in __del__
    self.disconnect()
  File "/home/jelte/python_venvs/ibridges_venv/lib/python3.10/site-packages/irods/connection.py", line 299, in disconnect
    self.socket = self.socket.unwrap()
  File "/usr/lib/python3.10/ssl.py", line 1318, in unwrap
    s = self._sslobj.shutdown()
ssl.SSLError: [SSL: APPLICATION_DATA_AFTER_CLOSE_NOTIFY] application data after close notify (_ssl.c:2672)

As above, the files appear on iRODS and checksum are identical.
@jpmcfarland
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See current PRC bug:

irods/python-irodsclient#377

I'm going to do some testing of my own while tweaking the tcp_keepalive_time values.

@jpmcfarland jpmcfarland added the duplicate This issue or pull request already exists label Mar 13, 2023
@jpmcfarland
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Also, Issue #31 is the same.

jpmcfarland pushed a commit that referenced this issue May 22, 2023
@chStaiger
Merge pull request #71 from chStaiger/jpm/feature/65_remove_annotations
399f2fc 
[#65] Remove unneeded annotations
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