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Update egapx #46

Merged
merged 27 commits into from
Dec 21, 2024
Merged

Update egapx #46

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e18f7d0
output gff is now a separate histroy item
Oct 11, 2024
2f8ec0e
changed tests back to expect failure
Oct 11, 2024
f7a8a0c
bumping version number
Oct 11, 2024
2c87063
making form interface the default, adding proteins
Oct 14, 2024
3206869
making form interface the default, adding proteins, minor reformatting
Oct 14, 2024
b2c63f1
bumping version
Oct 14, 2024
0162ba3
Merge branch 'main' into update-egapx
richard-burhans Oct 14, 2024
e4bf7ac
update
Nov 15, 2024
0dfb5f1
Merge branch 'main' into update-egapx
richard-burhans Nov 15, 2024
ac0cd3e
Update tools/ncbi_egapx/macros.xml
richard-burhans Nov 15, 2024
fcb701a
Update tools/ncbi_egapx/macros.xml
richard-burhans Nov 16, 2024
f555eb9
Update tools/ncbi_egapx/macros.xml
richard-burhans Nov 16, 2024
daeff42
Update tools/ncbi_egapx/ncbi_egapx.xml
richard-burhans Nov 16, 2024
ba23c5a
Merge branch 'main' into update-egapx
richard-burhans Nov 16, 2024
cbddd19
fixing
Nov 16, 2024
f776add
interface updates
Nov 16, 2024
6aa8a2a
Merge branch 'main' into update-egapx
richard-burhans Nov 16, 2024
866fe23
testing with updated container
Nov 18, 2024
05c5dd0
upgrading to 0.3.1-alpha
Nov 19, 2024
35dce2b
initial work towards supporting input items from the history
Dec 20, 2024
82dde7d
chaingin profile version
Dec 20, 2024
46f7229
Merge branch 'main' into update-egapx
richard-burhans Dec 20, 2024
24875e1
switching tests to expect failure
Dec 20, 2024
e16e272
Merge branch 'update-egapx' of https://github.com/richard-burhans/gal…
Dec 20, 2024
7728544
missed one instance of xtra -> extra
Dec 20, 2024
2ef19f7
fixed bibtex
Dec 21, 2024
4413448
Merge branch 'main' into update-egapx
richard-burhans Dec 21, 2024
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6 changes: 3 additions & 3 deletions tools/ncbi_egapx/macros.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
</requirements>
</xml>
<token name="@TOOL_VERSION@">0.3.1-alpha</token>
<token name="@VERSION_SUFFIX@">0</token>
<token name="@VERSION_SUFFIX@">1</token>
<token name="@PROFILE@">24.2</token>
<xml name="edam_ontology">
<edam_operations>
Expand All @@ -17,11 +17,11 @@
<citation type="bibtex">
@misc{githubegapx,
author = {NCBI},
year = "2024",
year = 2024,
title = {Eukaryotic Genome Annotation Pipeline - External (EGAPx)},
publisher = {GitHub},
journal = {GitHub repository},
url = {https://github.com/ncbi/egapxm
url = {https://github.com/ncbi/egapx}
}
</citation>
</citations>
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