interface updates

richard-burhans · Nov 16, 2024 · f776add · f776add
1 parent cbddd19
commit f776add
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Showing 2 changed files with 8 additions and 8 deletions.
diff --git a/tools/ncbi_egapx/macros.xml b/tools/ncbi_egapx/macros.xml
@@ -5,7 +5,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.2-alpha</token>
-    <token name="@VERSION_SUFFIX@">5</token>
+    <token name="@VERSION_SUFFIX@">6</token>
     <token name="@PROFILE@">22.05</token>
     <xml name="edam_ontology">
         <edam_operations>

diff --git a/tools/ncbi_egapx/ncbi_egapx.xml b/tools/ncbi_egapx/ncbi_egapx.xml
@@ -32,20 +32,20 @@
         #set genome_value = $cond_input_style.cond_genome_style.uri
     #end if
 genome: $genome_value
-taxid: $taxid
-    #if str($cond_rnaseq_style.rnaseq_style) == "list"
-        #set $reads_values = $rnaseq.split()
+taxid: $cond_input_style.taxid
+    #if str($cond_input_style.cond_rnaseq_style.rnaseq_style) == "history"
+        #set $reads_values = $cond_input_style.cond_rnaseq_style.rnaseq
     #else
-        #set $reads_values = $rnaseq
+        #set $reads_values = $cond_input_style.cond_rnaseq_style.rnaseq.split()
     #end if
 reads:
     #for r in [x.strip() for x in $reads_values]
   - $r
     #end for
-    #if str($proteins) != "None"
-proteins: $proteins
+    #if str($cond_input_style.proteins) != "None"
+proteins: $cond_input_styleproteins
     #end if
-    #for row in $xtra.strip().split("\n")
+    #for row in $cond_input_style.xtra.strip().split("\n")
 $row
     #end for
 #end if