Update egapx (#46)

* output gff is now a separate histroy item
* making form interface the default, adding proteins, minor reformatting
* interface updates
* upgrading to 0.3.1-alpha
* initial work towards supporting input items from the history
* changing profile version
* fixed bibtex

tools/ncbi_egapx/macros.xml

@@ -5,7 +5,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.3.1-alpha</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">24.2</token>
     <xml name="edam_ontology">
         <edam_operations>
@@ -17,11 +17,11 @@
             <citation type="bibtex">
                 @misc{githubegapx,
                     author = {NCBI},
-                    year = "2024",
+                    year = 2024,
                     title = {Eukaryotic Genome Annotation Pipeline - External (EGAPx)},
                     publisher = {GitHub},
                     journal = {GitHub repository},
-                    url = {https://github.com/ncbi/egapxm
+                    url = {https://github.com/ncbi/egapx}
                 }
             </citation>
         </citations>