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replace double quotes with singles in command lines
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fubar2 committed Sep 5, 2024
1 parent ba749a8 commit 336da21
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions tools/ncbi_egapx/ncbi_egapx.xml
Original file line number Diff line number Diff line change
Expand Up @@ -21,16 +21,16 @@
#else:
echo 'genome: $reference_genome.uri' >> 'egapx.yaml' &&
#end if
echo "reads:" >> 'egapx.yaml' &&
echo 'reads:' >> 'egapx.yaml' &&
#if str($condrnaseq.rna_type_select) == "history":
#for $r in $rnaseq:
echo " - $r" >> 'egapx.yaml' &&
echo ' - $r' >> 'egapx.yaml' &&
#end for
#else:
#set rs = $rnaseq.split()
#set rsplit = [x.strip() for x in $rs]
#for $r in $rsplit:
echo " - $r" >> 'egapx.yaml' &&
echo ' - $r' >> 'egapx.yaml' &&
#end for
#end if
#if len($xtra.strip()) > 0:
Expand All @@ -39,7 +39,7 @@
echo '$row' >> 'egapx.yaml' &&
#end for
#end if
echo "" >> 'egapx.yaml' &&
echo '' >> 'egapx.yaml' &&
echo "Calculated contents of egapx yaml" &&
cat 'egapx.yaml' &&
#end if
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