Rosella is a metagenomic binning algorithm using UMAP and HDBSCAN. It is written in Rust with a python component that handles calls to UMAP and HDBSCAN. Rosella aims to be as user friendly as possible with multiple usage modes and installation methods.
Please note that Rosella is under active development with new commits often providing much improved results. If you would like
the most up to date version of Rosella please pull the code from dev branch. Hopefully releases will stabilise very soon.
It's recommended that you create a new environment to ensure conda can correctly handle of the rosella's dependencies:
conda create -n rosella -c bioconda rosella
conda activate rosella
rosella --versionAfter cloning the repo with rust and cargo installed on your system
cd rosella
cargo install --path .Create the conda environment
mamba env create -f rosella.yml -n rosella
mamba activate rosella
rosella --helpPlease refer to documentation for installation and usage instructions.