Update annotation.smkwith new GTDB DB URL #207
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This gives a 404 error (as of 2024-06-01)" https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_data.tar.gz This seems to be the same file: https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
fixes disk race condition, see snakemake/snakemake#2859
Reverting to version of snakemake that works with config file
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Hi @JamesRH, Thanks for doing this but just wanted to check if this is complete and ready for review or you are still working on it? Cheers, |
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@rhysnewell can this be merged? |
rhysnewell
approved these changes
Sep 1, 2024
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This gives a 404 error (as of 2024-06-01):
https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_data.tar.gz
This seems to be the same file:
https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz