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fix: update tests again
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rhysnewell committed Jan 11, 2024
1 parent 4f85b6d commit e999d55
Showing 1 changed file with 2 additions and 3 deletions.
5 changes: 2 additions & 3 deletions test/test_recover.py
Original file line number Diff line number Diff line change
Expand Up @@ -40,11 +40,11 @@ def test_recover_simple_inputs(self):
self.assertTrue("metabat_ssens" in output)
self.assertTrue("metabat_sspec" in output)
self.assertTrue("metabat2" in output)
self.assertTrue("maxbin2" in output)
self.assertTrue("maxbin2" not in output)
self.assertTrue("rosella" in output)
self.assertTrue("semibin" in output)
self.assertTrue("vamb" in output)
self.assertTrue("concoct" in output)
self.assertTrue("concoct" not in output)
self.assertTrue("das_tool" in output)

# Refinery
Expand Down Expand Up @@ -308,7 +308,6 @@ def test_recover_binning_only(self):
f"--output {tmpdir}/test "
f"--conda-prefix {path_to_conda} "
f"--dryrun --tmpdir {tmpdir} "
f"--extra-binners maxbin concoct "
f"--snakemake-cmds \" --quiet\" "
)
output = extern.run(cmd)
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