fix test paths

rhysnewell · Jan 15, 2024 · bcc11ef · bcc11ef
1 parent c794b59
commit bcc11ef
Showing 1 changed file with 12 additions and 12 deletions.
diff --git a/test/test_integration.py b/test/test_integration.py
@@ -96,12 +96,12 @@ def test_short_read_recovery(self):
         self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/data/final_contigs.fasta"))
         self.assertTrue(os.path.islink(f"{output_dir}/aviary_out/assembly/final_contigs.fasta"))
 
-        self.assertTrue(os.path.islink(f"{output_dir}/aviary_out/diversity/singlem_out"))
-        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_out/metagenome.combined_otu_table.csv"))
-        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/singlem_out/metagenome.combined_otu_table.csv") > 0)
-        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_out/singlem_appraisal.tsv"))
-        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/singlem_out/singlem_appraisal.tsv") > 0)
-        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_out/singlem_appraise.svg"))
+        self.assertTrue(os.path.islink(f"{output_dir}/aviary_out/diversity"))
+        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/metagenome.combined_otu_table.csv"))
+        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/metagenome.combined_otu_table.csv") > 0)
+        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_appraisal.tsv"))
+        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/singlem_appraisal.tsv") > 0)
+        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_appraise.svg"))
 
     def test_long_read_recovery(self):
         output_dir = os.path.join("example", "test_long_read_recovery")
@@ -123,12 +123,12 @@ def test_long_read_recovery(self):
         self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/data/final_contigs.fasta"))
         self.assertTrue(os.path.islink(f"{output_dir}/aviary_out/assembly/final_contigs.fasta"))
 
-        self.assertTrue(os.path.islink(f"{output_dir}/aviary_out/diversity/singlem_out"))
-        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_out/metagenome.combined_otu_table.csv"))
-        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/singlem_out/metagenome.combined_otu_table.csv") > 0)
-        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_out/singlem_appraisal.tsv"))
-        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/singlem_out/singlem_appraisal.tsv") > 0)
-        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_out/singlem_appraise.svg"))
+        self.assertTrue(os.path.islink(f"{output_dir}/aviary_out/diversity"))
+        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/metagenome.combined_otu_table.csv"))
+        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/metagenome.combined_otu_table.csv") > 0)
+        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_appraisal.tsv"))
+        self.assertTrue(os.path.getsize(f"{output_dir}/aviary_out/diversity/singlem_appraisal.tsv") > 0)
+        self.assertTrue(os.path.isfile(f"{output_dir}/aviary_out/diversity/singlem_appraise.svg"))
 
     def test_short_read_recovery_fast(self):
         output_dir = os.path.join("example", "test_short_read_recovery_fast")