fix: remove debug

rhysnewell · Apr 9, 2024 · b5a1d3a · b5a1d3a
1 parent c50b6b5
commit b5a1d3a
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Showing 2 changed files with 5 additions and 6 deletions.
diff --git a/aviary/modules/processor.py b/aviary/modules/processor.py
@@ -521,7 +521,6 @@ def process_batch(args, prefix):
             break
 
     batch = pd.read_csv(args.batch_file, sep=separator, engine='python', names=BATCH_HEADER, header=header)
-    print(batch)
     if len(batch.columns) != 7:
         logging.critical(f"Batch file contains incorrect number of columns ({len(batch.columns)}). Should contain 7.")
         logging.critical(f"Current columns: {batch.columns}")

diff --git a/docs/_include/examples/example_batch.tsv b/docs/_include/examples/example_batch.tsv
@@ -1,5 +1,5 @@
-sample	short_reads_1	short_reads_2	long_reads	long_read_type	assembly    coassemble
-sample_1	pe1.fq.gz	pe2.fq.gz	nanopore.fq.gz	ont	NA  NA
-sample_2	interleaved.fq.gz	NA	pacbio.fq.gz	ccs	NA  NA
-sample_3	pe1.1.fq.gz,pe1.2.fq.gz	pe2.1.fq.gz,pe2.2.fq.gz	n1.fq.gz,n2.fq.gz,n3.fq.gz	ont-hq	NA  True
-sample_4	pe1.1.fq.gz,pe1.2.fq.gz	pe2.1.fq.gz,pe2.2.fq.gz	n1.fq.gz,n2.fq.gz,n3.fq.gz	ont-hq	assembly.fasta  False
+sample   	short_reads_1           	short_reads_2           	long_reads                 	long_read_type 	assembly    coassemble
+sample_1 	pe1.fq.gz               	pe2.fq.gz               	nanopore.fq.gz             	ont            	NA  NA
+sample_2 	interleaved.fq.gz       	NA                      	pacbio.fq.gz               	ccs            	NA  NA
+sample_3 	pe1.1.fq.gz,pe1.2.fq.gz 	pe2.1.fq.gz,pe2.2.fq.gz 	n1.fq.gz,n2.fq.gz,n3.fq.gz 	ont-hq         	NA  True
+sample_4 	pe1.1.fq.gz,pe1.2.fq.gz 	pe2.1.fq.gz,pe2.2.fq.gz 	n1.fq.gz,n2.fq.gz,n3.fq.gz 	ont-hq         	assembly.fasta  False