fix integration test for long read assembly

rhysnewell · Sep 13, 2023 · 3a262b8 · 3a262b8
1 parent 5dda456
commit 3a262b8
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/test/test_integration.py b/test/test_integration.py
@@ -64,6 +64,7 @@ def test_long_read_assembly(self):
             f"-2 {data}/wgsim.2.fq.gz "
             f"-l {data}/pbsim.fq.gz "
             f"--longread-type ont "
+            f"--min-read-size 10 --min-mean-q 1 "
             f"--conda-prefix {path_to_conda} "
             f"-n 32 -t 32 "
         )
@@ -105,6 +106,7 @@ def test_long_read_recovery(self):
             f"-2 {data}/wgsim.2.fq.gz "
             f"-l {data}/pbsim.fq.gz "
             f"--longread-type ont "
+            f"--min-read-size 10 --min-mean-q 1 "
             f"--conda-prefix {path_to_conda} "
             f"-n 32 -t 32 "
         )